Difference between revisions of "TSS:Hg 138250.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000458403.2:0 NM_001267044 | + | |all_trans=ENST00000458403.2:0 NM_001267044:0 AK130129:0 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=COL4A2 antisense | + | |gene_description=COL4A2 antisense 2 |
|gene_id=100129836 | |gene_id=100129836 | ||
|gene_name=COL4A2 antisense RNA 2 | |gene_name=COL4A2 antisense RNA 2 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001267044 | |nearest_refseq=NM_001267044 | ||
|nearest_unigene=Hs.640035 | |nearest_unigene=Hs.640035 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=110463285 | |start=110463285 | ||
|start_of_center_position=110463286 | |start_of_center_position=110463286 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CCCTATAAAAAG,-,0.00),44(CCGTCTATAAGC,-,0.00) |
| − | |transcript_name=ENST00000458403.2 NM_001267044 | + | |transcript_name=ENST00000458403.2 NM_001267044 AK130129 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_138250.1 | |tss_id=hg_138250.1 | ||
Revision as of 06:56, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 110463286 |
|---|---|
| End of the center position in the TSS region: | 110463287 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000458403.2 NM_001267044 AK130129 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000458403.2:0 NM_001267044:0 AK130129:0 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001267044 |
| Entrez ID: | 100129836 |
| Nearest Unigene: | Hs.640035 |
| Nearest Refseq: | NM_001267044 |
| Nearest Ensembl: | |
| Gene Name: | COL4A2 antisense RNA 2 |
| Gene Alias: | - |
| Gene Description: | COL4A2 antisense 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CCCTATAAAAAG,-,0.00),44(CCGTCTATAAGC,-,0.00) |
