Difference between revisions of "TSS:Hg 145189.1"
From referenceTSS
Line 9: | Line 9: | ||
|TF3B90= | |TF3B90= | ||
|TFIIIB90= | |TFIIIB90= | ||
− | |all_trans=BC016743:21 EU668327:21 ENST00000619151.4:-23 | + | |all_trans=BC016743:21 EU668327:21 ENST00000619151.4:-23 U28838:-23 ENST00000547530.7:-32 NM_001519:-32 NM_001242788:-32 NM_001242790:-32 ENST00000379937.6:234 BC086856:234 U75276:271 ENST00000548421.2:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=21 | |distance=21 | ||
− | |distance_to_tss= | + | |distance_to_tss=37 |
|end=105300969 | |end=105300969 | ||
|end_of_center_position=105300964 | |end_of_center_position=105300964 | ||
|entrez_id=2972 | |entrez_id=2972 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
− | |gene_alias=BRF | + | |gene_alias=BRF{{!}}BRF-1{{!}}CFDS{{!}}GTF3B{{!}}HEL-S-76p{{!}}TAF3B2{{!}}TAF3C{{!}}TAFIII90{{!}}TF3B90{{!}}TFIIIB90{{!}}hBRF |
− | |gene_description= | + | |gene_description=BRF1 RNA polymerase III transcription initiation factor subunit |
|gene_id=2972 | |gene_id=2972 | ||
− | |gene_name= | + | |gene_name=BRF1 RNA polymerase III transcription initiation factor subunit |
|gene_source=HGNC:11551 | |gene_source=HGNC:11551 | ||
|gene_symbol=BRF1 | |gene_symbol=BRF1 | ||
Line 29: | Line 29: | ||
|hgnc_mgi_id=HGNC:11551 | |hgnc_mgi_id=HGNC:11551 | ||
|nearest_ensembl=ENSG00000185024 | |nearest_ensembl=ENSG00000185024 | ||
− | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001242788 |
|nearest_refseq=NM_001519 | |nearest_refseq=NM_001519 | ||
|nearest_unigene=Hs.424484 | |nearest_unigene=Hs.424484 | ||
− | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=105300958 | |start=105300958 |
Revision as of 09:37, 16 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 105300963 |
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End of the center position in the TSS region: | 105300964 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | BC016743 EU668327 |
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Distance: | 21 |
Num_trans: | 16 |
All_trans: | BC016743:21 EU668327:21 ENST00000619151.4:-23 U28838:-23 ENST00000547530.7:-32 NM_001519:-32 NM_001242788:-32 NM_001242790:-32 ENST00000379937.6:234 BC086856:234 U75276:271 ENST00000548421.2:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491 |
TATA-Box annotation
Distance to TSS: | 37 |
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Nearest PromoterID: | NM_001242788 |
Entrez ID: | 2972 |
Nearest Unigene: | Hs.424484 |
Nearest Refseq: | NM_001519 |
Nearest Ensembl: | ENSG00000185024 |
Gene Name: | BRF1 RNA polymerase III transcription initiation factor subunit |
Gene Alias: | BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF |
Gene Description: | BRF1 RNA polymerase III transcription initiation factor subunit |
Gene Type: | protein-coding |
CpG%: | 0.135 |
GC%: | 0.776119 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |