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Difference between revisions of "TSS:Hg 145189.1"

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Line 9: Line 9:
 
|TF3B90=
 
|TF3B90=
 
|TFIIIB90=
 
|TFIIIB90=
|all_trans=BC016743:21 EU668327:21 ENST00000619151.4:-23 NM_001519:-23 NM_001242788:-23 NM_001242790:-23 uc059fzf.1:-23 U28838:-23 ENST00000379937.6:234 uc010axg.2:234 BC086856:234 ENST00000547530.6:271 U75276:271 ENST00000548421.2:-309 uc001yqr.4:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491 uc059fzm.1:491
+
|all_trans=BC016743:21 EU668327:21 ENST00000619151.4:-23 U28838:-23 ENST00000547530.7:-32 NM_001519:-32 NM_001242788:-32 NM_001242790:-32 ENST00000379937.6:234 BC086856:234 U75276:271 ENST00000548421.2:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491
 
|chr=chr14
 
|chr=chr14
 
|cpg_percent=0.135
 
|cpg_percent=0.135
 
|distance=21
 
|distance=21
|distance_to_tss=28
+
|distance_to_tss=37
 
|end=105300969
 
|end=105300969
 
|end_of_center_position=105300964
 
|end_of_center_position=105300964
 
|entrez_id=2972
 
|entrez_id=2972
 
|gc_percent=0.776119
 
|gc_percent=0.776119
|gene_alias=BRF
+
|gene_alias=BRF{{!}}BRF-1{{!}}CFDS{{!}}GTF3B{{!}}HEL-S-76p{{!}}TAF3B2{{!}}TAF3C{{!}}TAFIII90{{!}}TF3B90{{!}}TFIIIB90{{!}}hBRF
|gene_description="BRF1, RNA polymerase III transcription initiation factor subunit"
+
|gene_description=BRF1 RNA polymerase III transcription initiation factor subunit
 
|gene_id=2972
 
|gene_id=2972
|gene_name="BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit"
+
|gene_name=BRF1 RNA polymerase III transcription initiation factor subunit
 
|gene_source=HGNC:11551
 
|gene_source=HGNC:11551
 
|gene_symbol=BRF1
 
|gene_symbol=BRF1
Line 29: Line 29:
 
|hgnc_mgi_id=HGNC:11551
 
|hgnc_mgi_id=HGNC:11551
 
|nearest_ensembl=ENSG00000185024
 
|nearest_ensembl=ENSG00000185024
|nearest_promoter_id=NM_001242790
+
|nearest_promoter_id=NM_001242788
 
|nearest_refseq=NM_001519
 
|nearest_refseq=NM_001519
 
|nearest_unigene=Hs.424484
 
|nearest_unigene=Hs.424484
|num_trans=20
+
|num_trans=16
 
|species=human
 
|species=human
 
|start=105300958
 
|start=105300958

Revision as of 09:37, 16 June 2021

Basic information about the TSS


TSS ID:hg_145189.1
Species:human
Chr:chr14
TSS Classification:yes
Start:105300958
End:105300969
Strand:-
TSS Score:1
Start of the center position in the TSS region:105300963
End of the center position in the TSS region:105300964



Gene and protein annotation


Transcript_name:BC016743 EU668327
Distance:21
GeneID:2972
HGNC/MGI_ID:HGNC:11551
UniProt_ID:V9HVY2
Gene_name:BRF1 RNA polymerase III transcription initiation factor subunit
Gene_symbol:BRF1
Gene_synonyms:BRF TFIIIB90 hBRF
Gene_source:HGNC:11551



Transcript annotation


Transcript_name:BC016743 EU668327
Distance:21
Num_trans:16
All_trans:BC016743:21 EU668327:21 ENST00000619151.4:-23 U28838:-23 ENST00000547530.7:-32 NM_001519:-32 NM_001242788:-32 NM_001242790:-32 ENST00000379937.6:234 BC086856:234 U75276:271 ENST00000548421.2:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491



TATA-Box annotation


Distance to TSS:37
Nearest PromoterID:NM_001242788
Entrez ID:2972
Nearest Unigene:Hs.424484
Nearest Refseq:NM_001519
Nearest Ensembl:ENSG00000185024
Gene Name:BRF1 RNA polymerase III transcription initiation factor subunit
Gene Alias:BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF
Gene Description:BRF1 RNA polymerase III transcription initiation factor subunit
Gene Type:protein-coding
CpG%:0.135
GC%:0.776119
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):