Difference between revisions of "TSS:Hg 146613.1"
From referenceTSS
| Line 9: | Line 9: | ||
|NRF2B1= | |NRF2B1= | ||
|NRF2B2= | |NRF2B2= | ||
| − | |all_trans=ENST00000499624.3:0 | + | |all_trans=ENST00000668321.1:0 ENST00000667317.1:0 ENST00000499624.3:0 ENST00000648591.1:0 BX537481:0 ENST00000561289.1:45 ENST00000499326.1:53 ENST00000560359.1:-128 LF349297:-310 MA584874:-310 LF349296:-430 MA584873:-430 BC004103:-437 ENST00000659570.1:-469 ENST00000670332.1:-485 ENST00000619314.1:-497 BC014238:-497 |
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-70 |
|end=50355500 | |end=50355500 | ||
|end_of_center_position=50355478 | |end_of_center_position=50355478 | ||
|entrez_id=2553 | |entrez_id=2553 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=BABPB2 | + | |gene_alias=BABPB2{{!}}E4TF1{{!}}E4TF1-47{{!}}E4TF1-53{{!}}E4TF1B{{!}}GABPB{{!}}GABPB-1{{!}}GABPB2{{!}}NRF2B1{{!}}NRF2B2 |
| − | |gene_description=GA binding protein transcription factor beta | + | |gene_description=GA binding protein transcription factor subunit beta 1 |
|gene_id=100129387 | |gene_id=100129387 | ||
|gene_name=GABPB1 antisense RNA 1 | |gene_name=GABPB1 antisense RNA 1 | ||
| Line 28: | Line 28: | ||
|hgnc_mgi_id=HGNC:44157 | |hgnc_mgi_id=HGNC:44157 | ||
|nearest_ensembl=ENSG00000104064 | |nearest_ensembl=ENSG00000104064 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_181427 |
|nearest_refseq=NM_002041 | |nearest_refseq=NM_002041 | ||
|nearest_unigene=Hs.654350 | |nearest_unigene=Hs.654350 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=50355455 | |start=50355455 | ||
|start_of_center_position=50355477 | |start_of_center_position=50355477 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000499624.3 | + | |transcript_name=ENST00000668321.1 ENST00000667317.1 ENST00000499624.3 ENST00000648591.1 BX537481 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_146613.1 | |tss_id=hg_146613.1 | ||
Revision as of 10:10, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 50355477 |
|---|---|
| End of the center position in the TSS region: | 50355478 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000668321.1 ENST00000667317.1 ENST00000499624.3 ENST00000648591.1 BX537481 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000668321.1:0 ENST00000667317.1:0 ENST00000499624.3:0 ENST00000648591.1:0 BX537481:0 ENST00000561289.1:45 ENST00000499326.1:53 ENST00000560359.1:-128 LF349297:-310 MA584874:-310 LF349296:-430 MA584873:-430 BC004103:-437 ENST00000659570.1:-469 ENST00000670332.1:-485 ENST00000619314.1:-497 BC014238:-497 |
TATA-Box annotation
| Distance to TSS: | -70 |
|---|---|
| Nearest PromoterID: | NM_181427 |
| Entrez ID: | 2553 |
| Nearest Unigene: | Hs.654350 |
| Nearest Refseq: | NM_002041 |
| Nearest Ensembl: | ENSG00000104064 |
| Gene Name: | GABPB1 antisense RNA 1 |
| Gene Alias: | BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB-1|GABPB2|NRF2B1|NRF2B2 |
| Gene Description: | GA binding protein transcription factor subunit beta 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
