Difference between revisions of "TSS:Hg 158188.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RAP1= | |RAP1= | ||
| + | |all_trans=ENST00000633875.4:0 NM_001351307:0 NM_001351308:0 NM_001351309:0 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=75701463 | |end=75701463 | ||
|end_of_center_position=75701462 | |end_of_center_position=75701462 | ||
| − | |entrez_id= | + | |entrez_id=100033411 |
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=double homeobox B |
| − | |gene_name= | + | |gene_id=100033411 |
| + | |gene_name=double homeobox B | ||
| + | |gene_source=HGNC:33345 | ||
| + | |gene_symbol=DUXB | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:33345 |
| − | |nearest_promoter_id= | + | |nearest_ensembl=ENSG00000282757 |
| − | |nearest_refseq= | + | |nearest_promoter_id=NM_001351307 |
| − | |nearest_unigene= | + | |nearest_refseq=NM_001351307 |
| − | |num_trans= | + | |nearest_unigene= |
| + | |num_trans=4 | ||
|species=human | |species=human | ||
|start=75701459 | |start=75701459 | ||
|start_of_center_position=75701461 | |start_of_center_position=75701461 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-65(AGCTATTTAAGA,-,0.00),-34(CCCTATATAAAG,-,0.00),-32(CTATATAAAGCC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000633875.4 NM_001351307 NM_001351308 NM_001351309 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_158188.1 | |tss_id=hg_158188.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A1W2PPF3 | ||
}} | }} | ||
Revision as of 14:37, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75701461 |
|---|---|
| End of the center position in the TSS region: | 75701462 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000633875.4 NM_001351307 NM_001351308 NM_001351309 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENST00000633875.4:0 NM_001351307:0 NM_001351308:0 NM_001351309:0 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001351307 |
| Entrez ID: | 100033411 |
| Nearest Unigene: | |
| Nearest Refseq: | NM_001351307 |
| Nearest Ensembl: | ENSG00000282757 |
| Gene Name: | double homeobox B |
| Gene Alias: | - |
| Gene Description: | double homeobox B |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -65(AGCTATTTAAGA,-,0.00),-34(CCCTATATAAAG,-,0.00),-32(CTATATAAAGCC,+,0.00) |
