Difference between revisions of "TSS:Hg 158960.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AK128415:19 LF209173:27 MA444750:27 AK309386:-44 ENST00000381365.4:-80 NM_001145536:-80 LF326561:174 MA562138:174 ENST00000521575.1:-198 AK308530:-198 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=19 | |distance=19 | ||
| − | |distance_to_tss= | + | |distance_to_tss=89 |
|end=4899634 | |end=4899634 | ||
|end_of_center_position=4899625 | |end_of_center_position=4899625 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001145536 | |nearest_refseq=NM_001145536 | ||
|nearest_unigene=Hs.579243 | |nearest_unigene=Hs.579243 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=4899615 | |start=4899615 | ||
|start_of_center_position=4899624 | |start_of_center_position=4899624 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK128415 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_158960.1 | |tss_id=hg_158960.1 | ||
Revision as of 14:55, 16 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4899624 |
|---|---|
| End of the center position in the TSS region: | 4899625 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK128415 |
|---|---|
| Distance: | 19 |
| Num_trans: | 10 |
| All_trans: | AK128415:19 LF209173:27 MA444750:27 AK309386:-44 ENST00000381365.4:-80 NM_001145536:-80 LF326561:174 MA562138:174 ENST00000521575.1:-198 AK308530:-198 |
TATA-Box annotation
| Distance to TSS: | 89 |
|---|---|
| Nearest PromoterID: | NM_001145536 |
| Entrez ID: | 100130311 |
| Nearest Unigene: | Hs.579243 |
| Nearest Refseq: | NM_001145536 |
| Nearest Ensembl: | ENSG00000205710 |
| Gene Name: | chromosome 17 open reading frame 107 |
| Gene Alias: | - |
| Gene Description: | chromosome 17 open reading frame 107 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
