Difference between revisions of "TSS:Hg 16809.1"
From referenceTSS
| Line 8: | Line 8: | ||
|YKL40= | |YKL40= | ||
|YYL-40= | |YYL-40= | ||
| − | |all_trans= | + | |all_trans=BC008568:1 AK312911:-23 ENST00000255409.8:37 NM_001276:37 AK130142:37 AK130200:37 AK225266:38 AK225584:38 M80927:47 BC039132:51 BC038354:60 EU831608:118 EU831695:118 BT007223:118 DQ890777:118 KJ896597:118 KJ896598:118 DQ893937:118 CU678995:118 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=1 |
| − | |distance_to_tss= | + | |distance_to_tss=-43 |
|end=203186754 | |end=203186754 | ||
|end_of_center_position=203186748 | |end_of_center_position=203186748 | ||
|entrez_id=1116 | |entrez_id=1116 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=ASRT7 | + | |gene_alias=ASRT7{{!}}CGP-39{{!}}GP-39{{!}}GP39{{!}}HC-gp39{{!}}HCGP-3P{{!}}YK-40{{!}}YKL-40{{!}}YKL40{{!}}YYL-40{{!}}hCGP-39 |
|gene_description=chitinase 3 like 1 | |gene_description=chitinase 3 like 1 | ||
|gene_id=1116 | |gene_id=1116 | ||
| Line 23: | Line 23: | ||
|gene_source=HGNC:1932 | |gene_source=HGNC:1932 | ||
|gene_symbol=CHI3L1 | |gene_symbol=CHI3L1 | ||
| − | |gene_synonyms=GP39 YKL40 | + | |gene_synonyms=GP39 YK-40 YKL40 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hCGP-39= | |hCGP-39= | ||
| Line 31: | Line 31: | ||
|nearest_refseq=NM_001276 | |nearest_refseq=NM_001276 | ||
|nearest_unigene=Hs.382202 | |nearest_unigene=Hs.382202 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=203186740 | |start=203186740 | ||
|start_of_center_position=203186747 | |start_of_center_position=203186747 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(TCCCATAAAAGG,-,0.00),-32(CCATAAAAGGGC,+,0.00),11(AGGTATATAAAG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=BC008568 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_16809.1 | |tss_id=hg_16809.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:25, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 203186747 |
|---|---|
| End of the center position in the TSS region: | 203186748 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC008568 |
|---|---|
| Distance: | 1 |
| Num_trans: | 19 |
| All_trans: | BC008568:1 AK312911:-23 ENST00000255409.8:37 NM_001276:37 AK130142:37 AK130200:37 AK225266:38 AK225584:38 M80927:47 BC039132:51 BC038354:60 EU831608:118 EU831695:118 BT007223:118 DQ890777:118 KJ896597:118 KJ896598:118 DQ893937:118 CU678995:118 |
TATA-Box annotation
| Distance to TSS: | -43 |
|---|---|
| Nearest PromoterID: | NM_001276 |
| Entrez ID: | 1116 |
| Nearest Unigene: | Hs.382202 |
| Nearest Refseq: | NM_001276 |
| Nearest Ensembl: | ENSG00000133048 |
| Gene Name: | chitinase 3 like 1 |
| Gene Alias: | ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YK-40|YKL-40|YKL40|YYL-40|hCGP-39 |
| Gene Description: | chitinase 3 like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(TCCCATAAAAGG,-,0.00),-32(CCATAAAAGGGC,+,0.00),11(AGGTATATAAAG,-,0.00) |
