Difference between revisions of "TSS:Hg 171334.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000650323.1:0 ENST00000648976.1:412 | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=434 | |distance_to_tss=434 | ||
|end=22169878 | |end=22169878 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=GATA binding protein 6 | |gene_description=GATA binding protein 6 | ||
| − | |gene_name=GATA6 | + | |gene_id=100128893 |
| + | |gene_name=GATA6 antisense RNA 1 (head to head) | ||
| + | |gene_source=HGNC:48840 | ||
| + | |gene_symbol=GATA6-AS1 | ||
| + | |gene_synonyms=BM742401 locus5689 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:48840 | ||
|nearest_ensembl=ENSG00000141448 | |nearest_ensembl=ENSG00000141448 | ||
|nearest_promoter_id=NM_005257 | |nearest_promoter_id=NM_005257 | ||
|nearest_refseq=NM_005257 | |nearest_refseq=NM_005257 | ||
|nearest_unigene=Hs.514746 | |nearest_unigene=Hs.514746 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=22169863 | |start=22169863 | ||
|start_of_center_position=22169870 | |start_of_center_position=22169870 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000650323.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_171334.1 | |tss_id=hg_171334.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:39, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22169870 |
|---|---|
| End of the center position in the TSS region: | 22169871 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000650323.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000650323.1:0 ENST00000648976.1:412 |
TATA-Box annotation
| Distance to TSS: | 434 |
|---|---|
| Nearest PromoterID: | NM_005257 |
| Entrez ID: | 2627 |
| Nearest Unigene: | Hs.514746 |
| Nearest Refseq: | NM_005257 |
| Nearest Ensembl: | ENSG00000141448 |
| Gene Name: | GATA6 antisense RNA 1 (head to head) |
| Gene Alias: | - |
| Gene Description: | GATA binding protein 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
