Difference between revisions of "TSS:Hg 200821.1"
From referenceTSS
| Line 2: | Line 2: | ||
|EOLA1= | |EOLA1= | ||
|FLJ16423= | |FLJ16423= | ||
| − | |all_trans=AK310957:18 ENST00000608355 | + | |all_trans=AK310957:18 ENST00000608355.1:-20 ENST00000609651.5:25 ENST00000651111.1:-44 ENST00000608616.5:54 AK303548:54 ENST00000447209.5:74 ENST00000609161.5:76 ENST00000609314.5:-77 AK310119:-77 ENST00000608342.5:413 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=18 | |distance=18 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-138 |
|end=149540882 | |end=149540882 | ||
|end_of_center_position=149540875 | |end_of_center_position=149540875 | ||
|entrez_id=91966 | |entrez_id=91966 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=CXorf40 | + | |gene_alias=CXorf40{{!}}EOLA1 |
|gene_description=chromosome X open reading frame 40A | |gene_description=chromosome X open reading frame 40A | ||
|gene_id=100131434 | |gene_id=100131434 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:44265 | |hgnc_mgi_id=HGNC:44265 | ||
|nearest_ensembl=ENSG00000197620 | |nearest_ensembl=ENSG00000197620 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001171907 |
|nearest_refseq=NM_178124 | |nearest_refseq=NM_178124 | ||
|nearest_unigene=Hs.458216 | |nearest_unigene=Hs.458216 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=149540866 | |start=149540866 | ||
Revision as of 06:57, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 149540874 |
|---|---|
| End of the center position in the TSS region: | 149540875 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK310957 |
|---|---|
| Distance: | 18 |
| Num_trans: | 11 |
| All_trans: | AK310957:18 ENST00000608355.1:-20 ENST00000609651.5:25 ENST00000651111.1:-44 ENST00000608616.5:54 AK303548:54 ENST00000447209.5:74 ENST00000609161.5:76 ENST00000609314.5:-77 AK310119:-77 ENST00000608342.5:413 |
TATA-Box annotation
| Distance to TSS: | -138 |
|---|---|
| Nearest PromoterID: | NM_001171907 |
| Entrez ID: | 91966 |
| Nearest Unigene: | Hs.458216 |
| Nearest Refseq: | NM_178124 |
| Nearest Ensembl: | ENSG00000197620 |
| Gene Name: | long intergenic non-protein coding RNA 893 |
| Gene Alias: | CXorf40|EOLA1 |
| Gene Description: | chromosome X open reading frame 40A |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
