Difference between revisions of "TSS:Hg 220999.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000379800.4:-23 NM_145203:-23 | + | |all_trans=ENST00000379800.4:-23 NM_145203:-23 BC028723:-23 LP895889:-25 DQ891231:385 KJ900077:385 KJ905602:385 CU688552:385 DQ894415:385 AB528436:385 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=37105640 | |start_of_center_position=37105640 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-97(TCTTAAATGGAG,+,0.00) |
| − | |transcript_name=ENST00000379800.4 NM_145203 | + | |transcript_name=ENST00000379800.4 NM_145203 BC028723 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_220999.1 | |tss_id=hg_220999.1 | ||
Revision as of 08:31, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 37105640 |
|---|---|
| End of the center position in the TSS region: | 37105641 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000379800.4 NM_145203 BC028723 |
|---|---|
| Distance: | -23 |
| Num_trans: | 10 |
| All_trans: | ENST00000379800.4:-23 NM_145203:-23 BC028723:-23 LP895889:-25 DQ891231:385 KJ900077:385 KJ905602:385 CU688552:385 DQ894415:385 AB528436:385 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_145203 |
| Entrez ID: | 122011 |
| Nearest Unigene: | Hs.512897 |
| Nearest Refseq: | NM_145203 |
| Nearest Ensembl: | ENSG00000180138 |
| Gene Name: | casein kinase 1 alpha 1 like |
| Gene Alias: | CK1 |
| Gene Description: | casein kinase 1 alpha 1 like |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -97(TCTTAAATGGAG,+,0.00) |
