Difference between revisions of "TSS:Hg 231659.1"
From referenceTSS
| Line 2: | Line 2: | ||
|AOVD1= | |AOVD1= | ||
|TAN1= | |TAN1= | ||
| − | |all_trans= | + | |all_trans=LF807178:33 LZ947776:33 AF308602:33 M73980:33 ENST00000680133.1:-102 ENST00000680924.1:-126 ENST00000679595.1:-153 ENST00000651671.1:-153 ENST00000681454.1:-153 ENST00000680668.1:-153 ENST00000681135.1:-153 ENST00000680218.1:-153 NM_017617:-153 LY481191:-307 LY496063:-307 LY497906:-307 LY499411:-307 LY500814:-307 LZ239136:-307 MS869228:-307 MS869733:-307 MS880726:-307 MS996972:-307 MA806442:-307 MA823099:-307 LY616900:-307 FR772924:-307 LF159964:-307 LQ072053:-307 LY481116:-307 LY495753:-307 LY497553:-307 LY498863:-307 LY500437:-307 LZ238578:-307 MA405496:-307 MA645554:-307 MA733438:-307 MS637921:-307 MS868918:-307 MS869356:-307 MS880178:-307 MS996619:-307 MA802607:-307 MA805894:-307 MA822422:-307 LY616342:-307 MC002655:-307 LG052812:-364 LY481152:-364 LY495904:-364 LY497728:-364 LY499132:-364 LY500623:-364 LZ238842:-364 MS869069:-364 MS869542:-364 MS880447:-364 MS996794:-364 MA806172:-364 MA822759:-364 LY616606:-364 MC002680:-364 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=33 |
| − | |distance_to_tss= | + | |distance_to_tss=191 |
|end=136545895 | |end=136545895 | ||
|end_of_center_position=136545857 | |end_of_center_position=136545857 | ||
|entrez_id=4851 | |entrez_id=4851 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
| − | |gene_alias=AOS5 | + | |gene_alias=AOS5{{!}}AOVD1{{!}}TAN1{{!}}hN1 |
| − | |gene_description=notch 1 | + | |gene_description=notch receptor 1 |
|gene_id=4851 | |gene_id=4851 | ||
| − | |gene_name=notch 1 | + | |gene_name=notch receptor 1 |
|gene_source=HGNC:7881 | |gene_source=HGNC:7881 | ||
|gene_symbol=NOTCH1 | |gene_symbol=NOTCH1 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_017617 | |nearest_refseq=NM_017617 | ||
|nearest_unigene=Hs.495473 | |nearest_unigene=Hs.495473 | ||
| − | |num_trans= | + | |num_trans=63 |
|species=human | |species=human | ||
|start=136545818 | |start=136545818 | ||
|start_of_center_position=136545856 | |start_of_center_position=136545856 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF807178 LZ947776 AF308602 M73980 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_231659.1 | |tss_id=hg_231659.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 12:06, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136545856 |
|---|---|
| End of the center position in the TSS region: | 136545857 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF807178 LZ947776 AF308602 M73980 |
|---|---|
| Distance: | 33 |
| Num_trans: | 63 |
| All_trans: | LF807178:33 LZ947776:33 AF308602:33 M73980:33 ENST00000680133.1:-102 ENST00000680924.1:-126 ENST00000679595.1:-153 ENST00000651671.1:-153 ENST00000681454.1:-153 ENST00000680668.1:-153 ENST00000681135.1:-153 ENST00000680218.1:-153 NM_017617:-153 LY481191:-307 LY496063:-307 LY497906:-307 LY499411:-307 LY500814:-307 LZ239136:-307 MS869228:-307 MS869733:-307 MS880726:-307 MS996972:-307 MA806442:-307 MA823099:-307 LY616900:-307 FR772924:-307 LF159964:-307 LQ072053:-307 LY481116:-307 LY495753:-307 LY497553:-307 LY498863:-307 LY500437:-307 LZ238578:-307 MA405496:-307 MA645554:-307 MA733438:-307 MS637921:-307 MS868918:-307 MS869356:-307 MS880178:-307 MS996619:-307 MA802607:-307 MA805894:-307 MA822422:-307 LY616342:-307 MC002655:-307 LG052812:-364 LY481152:-364 LY495904:-364 LY497728:-364 LY499132:-364 LY500623:-364 LZ238842:-364 MS869069:-364 MS869542:-364 MS880447:-364 MS996794:-364 MA806172:-364 MA822759:-364 LY616606:-364 MC002680:-364 |
TATA-Box annotation
| Distance to TSS: | 191 |
|---|---|
| Nearest PromoterID: | NM_017617 |
| Entrez ID: | 4851 |
| Nearest Unigene: | Hs.495473 |
| Nearest Refseq: | NM_017617 |
| Nearest Ensembl: | ENSG00000148400 |
| Gene Name: | notch receptor 1 |
| Gene Alias: | AOS5|AOVD1|TAN1|hN1 |
| Gene Description: | notch receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
