Difference between revisions of "TSS:Hg 232205.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|STAM1= | |STAM1= | ||
| − | |all_trans= | + | |all_trans=ENST00000377315.5:24 NM_201570:24 ENST00000650685.1:83 ENST00000647168.2:125 ENST00000651330.1:125 AK299873:131 ENST00000643330.1:136 AK295113:136 ENST00000652478.1:138 ENST00000651928.1:156 AK293937:472 AF423192:481 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=24 |
| − | |distance_to_tss= | + | |distance_to_tss=57 |
|end=17644212 | |end=17644212 | ||
|end_of_center_position=18400551 | |end_of_center_position=18400551 | ||
|entrez_id=8027 | |entrez_id=8027 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=STAM-1 | + | |gene_alias=STAM-1{{!}}STAM1 |
|gene_description=signal transducing adaptor molecule | |gene_description=signal transducing adaptor molecule | ||
| − | |gene_id= | + | |gene_id=783 |
| − | |gene_name= | + | |gene_name=calcium voltage-gated channel auxiliary subunit beta 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1402 |
| − | |gene_symbol= | + | |gene_symbol=CACNB2 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1402 |
|nearest_ensembl=ENSG00000136738 | |nearest_ensembl=ENSG00000136738 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001324283 |
|nearest_refseq=NM_003473 | |nearest_refseq=NM_003473 | ||
|nearest_unigene=Hs.335391 | |nearest_unigene=Hs.335391 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=17644203 | |start=17644203 | ||
|start_of_center_position=18400550 | |start_of_center_position=18400550 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000377315.5 NM_201570 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232205.1 | |tss_id=hg_232205.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5VVH1 |
}} | }} | ||
Revision as of 12:19, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 18400550 |
|---|---|
| End of the center position in the TSS region: | 18400551 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000377315.5 NM_201570 |
|---|---|
| Distance: | 24 |
| Num_trans: | 12 |
| All_trans: | ENST00000377315.5:24 NM_201570:24 ENST00000650685.1:83 ENST00000647168.2:125 ENST00000651330.1:125 AK299873:131 ENST00000643330.1:136 AK295113:136 ENST00000652478.1:138 ENST00000651928.1:156 AK293937:472 AF423192:481 |
TATA-Box annotation
| Distance to TSS: | 57 |
|---|---|
| Nearest PromoterID: | NM_001324283 |
| Entrez ID: | 8027 |
| Nearest Unigene: | Hs.335391 |
| Nearest Refseq: | NM_003473 |
| Nearest Ensembl: | ENSG00000136738 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | STAM-1|STAM1 |
| Gene Description: | signal transducing adaptor molecule |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
