Difference between revisions of "TSS:Hg 232226.1"
From referenceTSS
| Line 5: | Line 5: | ||
|SSH3BP= | |SSH3BP= | ||
|SSH3BP1= | |SSH3BP1= | ||
| − | |all_trans= | + | |all_trans=ENST00000673384.1:-64 AK302419:-64 ENST00000672841.1:268 AK302627:268 NM_001312689:364 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance=- | + | |distance=-64 |
|distance_to_tss=5 | |distance_to_tss=5 | ||
|end=26861084 | |end=26861084 | ||
| Line 14: | Line 14: | ||
|entrez_id=10006 | |entrez_id=10006 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
| − | |gene_alias=ABI-1 | + | |gene_alias=ABI-1{{!}}ABLBP4{{!}}E3B1{{!}}NAP1BP{{!}}SSH3BP{{!}}SSH3BP1 |
|gene_description=abl interactor 1 | |gene_description=abl interactor 1 | ||
| − | |gene_id= | + | |gene_id=55130 |
| − | |gene_name= | + | |gene_name=outer dynein arm docking complex subunit 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:25583 |
| − | |gene_symbol= | + | |gene_symbol=ODAD2 |
| − | |gene_synonyms= | + | |gene_synonyms=CILD23 DKFZP434P1735 FLJ10376 FLJ10817 gudu |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:25583 |
|nearest_ensembl=ENSG00000136754 | |nearest_ensembl=ENSG00000136754 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001178124 |
|nearest_refseq=NM_005470 | |nearest_refseq=NM_005470 | ||
|nearest_unigene=Hs.508148 | |nearest_unigene=Hs.508148 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=26861079 | |start=26861079 | ||
|start_of_center_position=27983373 | |start_of_center_position=27983373 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000673384.1 AK302419 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232226.1 | |tss_id=hg_232226.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A5F9ZI13 B7Z7R7 |
}} | }} | ||
Revision as of 12:19, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27983373 |
|---|---|
| End of the center position in the TSS region: | 27983374 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000673384.1 AK302419 |
|---|---|
| Distance: | -64 |
| Num_trans: | 5 |
| All_trans: | ENST00000673384.1:-64 AK302419:-64 ENST00000672841.1:268 AK302627:268 NM_001312689:364 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001178124 |
| Entrez ID: | 10006 |
| Nearest Unigene: | Hs.508148 |
| Nearest Refseq: | NM_005470 |
| Nearest Ensembl: | ENSG00000136754 |
| Gene Name: | outer dynein arm docking complex subunit 2 |
| Gene Alias: | ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 |
| Gene Description: | abl interactor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
