Difference between revisions of "TSS:Hg 232268.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Hsd17b_2= | |Hsd17b_2= | ||
| − | |all_trans= | + | |all_trans=AK294827:69 ENST00000479913.1:-115 NM_001355216:-115 |
|bA291L22.1= | |bA291L22.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=69 |
|distance_to_tss=49 | |distance_to_tss=49 | ||
|end=38356430 | |end=38356430 | ||
| Line 11: | Line 11: | ||
|entrez_id=158160 | |entrez_id=158160 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=HSD17B7 | + | |gene_alias=HSD17B7{{!}}Hsd17b_2{{!}}bA291L22.1 |
|gene_description=hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 | |gene_description=hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 | ||
| − | |gene_id= | + | |gene_id=5979 |
| − | |gene_name= | + | |gene_name=ret proto-oncogene |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:9967 |
| − | |gene_symbol= | + | |gene_symbol=RET |
| − | |gene_synonyms= | + | |gene_synonyms=CDHF12 CDHR16 PTC RET51 |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:9967 |
|nearest_ensembl=ENSG00000099251 | |nearest_ensembl=ENSG00000099251 | ||
|nearest_promoter_id=NR_003086 | |nearest_promoter_id=NR_003086 | ||
|nearest_refseq=NM_182829 | |nearest_refseq=NM_182829 | ||
|nearest_unigene=Hs.652484 | |nearest_unigene=Hs.652484 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=38356427 | |start=38356427 | ||
|start_of_center_position=43104846 | |start_of_center_position=43104846 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK294827 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232268.1 | |tss_id=hg_232268.1 | ||
Revision as of 12:20, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 43104846 |
|---|---|
| End of the center position in the TSS region: | 43104847 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK294827 |
|---|---|
| Distance: | 69 |
| Num_trans: | 3 |
| All_trans: | AK294827:69 ENST00000479913.1:-115 NM_001355216:-115 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NR_003086 |
| Entrez ID: | 158160 |
| Nearest Unigene: | Hs.652484 |
| Nearest Refseq: | NM_182829 |
| Nearest Ensembl: | ENSG00000099251 |
| Gene Name: | ret proto-oncogene |
| Gene Alias: | HSD17B7|Hsd17b_2|bA291L22.1 |
| Gene Description: | hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 |
| Gene Type: | pseudo |
| CpG%: | 0.095 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
