Difference between revisions of "TSS:Hg 232280.1"
From referenceTSS
| Line 2: | Line 2: | ||
|AGAP7= | |AGAP7= | ||
|CTGLF4= | |CTGLF4= | ||
| − | |all_trans= | + | |all_trans=ENST00000374328.3:407 |
|bA109G10.1= | |bA109G10.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=407 |
|distance_to_tss=75 | |distance_to_tss=75 | ||
|end=46109570 | |end=46109570 | ||
| Line 12: | Line 12: | ||
|entrez_id=653268 | |entrez_id=653268 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=AGAP-7 | + | |gene_alias=AGAP-7{{!}}AGAP7{{!}}CTGLF4{{!}}bA109G10.1 |
| − | |gene_description= | + | |gene_description=ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene |
| − | |gene_id= | + | |gene_id=83849 |
| − | |gene_name= | + | |gene_name=synaptotagmin 15 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:17167 |
| − | |gene_symbol= | + | |gene_symbol=SYT15 |
| − | |gene_synonyms= | + | |gene_synonyms=CHR10SYT |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:17167 |
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_126580 | |nearest_promoter_id=NR_126580 | ||
|nearest_refseq=NM_001077685 | |nearest_refseq=NM_001077685 | ||
|nearest_unigene=Hs.447454 | |nearest_unigene=Hs.447454 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=46109569 | |start=46109569 | ||
|start_of_center_position=46581763 | |start_of_center_position=46581763 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000374328.3 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232280.1 | |tss_id=hg_232280.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=H3BLX3 |
}} | }} | ||
Revision as of 12:20, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46581763 |
|---|---|
| End of the center position in the TSS region: | 46581764 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374328.3 |
|---|---|
| Distance: | 407 |
| Num_trans: | 1 |
| All_trans: | ENST00000374328.3:407 |
TATA-Box annotation
| Distance to TSS: | 75 |
|---|---|
| Nearest PromoterID: | NR_126580 |
| Entrez ID: | 653268 |
| Nearest Unigene: | Hs.447454 |
| Nearest Refseq: | NM_001077685 |
| Nearest Ensembl: | |
| Gene Name: | synaptotagmin 15 |
| Gene Alias: | AGAP-7|AGAP7|CTGLF4|bA109G10.1 |
| Gene Description: | ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.055 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
