Difference between revisions of "TSS:Hg 232324.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|NET1A= | |NET1A= | ||
| − | |all_trans= | + | |all_trans=NM_001143774:-44 AL365474:-44 AM393181:80 ENST00000373878.3:-253 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-44 |
| − | |distance_to_tss= | + | |distance_to_tss=1281 |
|end=5413838 | |end=5413838 | ||
|end_of_center_position=59177511 | |end_of_center_position=59177511 | ||
|entrez_id=10276 | |entrez_id=10276 | ||
|gc_percent=0.288557 | |gc_percent=0.288557 | ||
| − | |gene_alias=ARHGEF8 | + | |gene_alias=ARHGEF8{{!}}NET1A |
|gene_description=neuroepithelial cell transforming 1 | |gene_description=neuroepithelial cell transforming 1 | ||
| − | |gene_id= | + | |gene_id=84457 |
| − | |gene_name= | + | |gene_name=phytanoyl-CoA 2-hydroxylase interacting protein like |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:29378 |
| − | |gene_symbol= | + | |gene_symbol=PHYHIPL |
| − | |gene_synonyms= | + | |gene_synonyms=Em:AC025038.1 KIAA1796 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:29378 |
|nearest_ensembl=ENSG00000173848 | |nearest_ensembl=ENSG00000173848 | ||
|nearest_promoter_id=NM_001047160 | |nearest_promoter_id=NM_001047160 | ||
|nearest_refseq=NM_005863 | |nearest_refseq=NM_005863 | ||
|nearest_unigene=Hs.25155 | |nearest_unigene=Hs.25155 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=5413837 | |start=5413837 | ||
|start_of_center_position=59177510 | |start_of_center_position=59177510 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001143774 AL365474 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232324.1 | |tss_id=hg_232324.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q96FC7 |
}} | }} | ||
Revision as of 12:21, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 59177510 |
|---|---|
| End of the center position in the TSS region: | 59177511 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001143774 AL365474 |
|---|---|
| Distance: | -44 |
| Num_trans: | 4 |
| All_trans: | NM_001143774:-44 AL365474:-44 AM393181:80 ENST00000373878.3:-253 |
TATA-Box annotation
| Distance to TSS: | 1281 |
|---|---|
| Nearest PromoterID: | NM_001047160 |
| Entrez ID: | 10276 |
| Nearest Unigene: | Hs.25155 |
| Nearest Refseq: | NM_005863 |
| Nearest Ensembl: | ENSG00000173848 |
| Gene Name: | phytanoyl-CoA 2-hydroxylase interacting protein like |
| Gene Alias: | ARHGEF8|NET1A |
| Gene Description: | neuroepithelial cell transforming 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.288557 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
