Difference between revisions of "TSS:Hg 232346.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SIR2L1= | |SIR2L1= | ||
|SIR2alpha= | |SIR2alpha= | ||
| − | |all_trans= | + | |all_trans=CU675917:5 AB527408:5 KJ892707:5 BC004182:-26 BC017228:-26 BC008071:-34 AK315585:-46 U41387:-47 ENST00000354185.9:-49 NM_004728:-49 BC009432:-49 BC104671:-91 LP895197:-91 ENST00000620315.1:219 NM_001256910:219 CR749598:219 BX648405:451 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=5 |
|distance_to_tss=2 | |distance_to_tss=2 | ||
|end=67885183 | |end=67885183 | ||
| Line 11: | Line 11: | ||
|entrez_id=23411 | |entrez_id=23411 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=SIR2 | + | |gene_alias=SIR2{{!}}SIR2L1{{!}}SIR2alpha |
|gene_description=sirtuin 1 | |gene_description=sirtuin 1 | ||
| − | |gene_id= | + | |gene_id=9188 |
| − | |gene_name= | + | |gene_name=DExD-box helicase 21 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:2744 |
| − | |gene_symbol= | + | |gene_symbol=DDX21 |
| − | |gene_synonyms= | + | |gene_synonyms=GURDB RH-II/GU |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:2744 |
|nearest_ensembl=ENSG00000096717 | |nearest_ensembl=ENSG00000096717 | ||
|nearest_promoter_id=NM_001142498 | |nearest_promoter_id=NM_001142498 | ||
|nearest_refseq=NM_012238 | |nearest_refseq=NM_012238 | ||
|nearest_unigene=Hs.369779 | |nearest_unigene=Hs.369779 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=67885182 | |start=67885182 | ||
|start_of_center_position=68956219 | |start_of_center_position=68956219 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=CU675917 AB527408 KJ892707 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232346.1 | |tss_id=hg_232346.1 | ||
Revision as of 12:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68956219 |
|---|---|
| End of the center position in the TSS region: | 68956220 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU675917 AB527408 KJ892707 |
|---|---|
| Distance: | 5 |
| Num_trans: | 17 |
| All_trans: | CU675917:5 AB527408:5 KJ892707:5 BC004182:-26 BC017228:-26 BC008071:-34 AK315585:-46 U41387:-47 ENST00000354185.9:-49 NM_004728:-49 BC009432:-49 BC104671:-91 LP895197:-91 ENST00000620315.1:219 NM_001256910:219 CR749598:219 BX648405:451 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001142498 |
| Entrez ID: | 23411 |
| Nearest Unigene: | Hs.369779 |
| Nearest Refseq: | NM_012238 |
| Nearest Ensembl: | ENSG00000096717 |
| Gene Name: | DExD-box helicase 21 |
| Gene Alias: | SIR2|SIR2L1|SIR2alpha |
| Gene Description: | sirtuin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
