Difference between revisions of "TSS:Hg 232402.1"
From referenceTSS
| Line 4: | Line 4: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=1 | |distance_to_tss=1 | ||
|end=7788108 | |end=7788108 | ||
| Line 10: | Line 10: | ||
|entrez_id=509 | |entrez_id=509 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=ATP5C | + | |gene_alias=ATP5C{{!}}ATP5C1{{!}}ATP5CL1 |
| − | |gene_description= | + | |gene_description=ATP synthase F1 subunit gamma |
|gene_id=509 | |gene_id=509 | ||
| − | |gene_name= | + | |gene_name=ATP5F1C |
|gene_source=HGNC:833 | |gene_source=HGNC:833 | ||
|gene_symbol=ATP5C1 | |gene_symbol=ATP5C1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:833 | |hgnc_mgi_id=HGNC:833 | ||
|nearest_ensembl=ENSG00000165629 | |nearest_ensembl=ENSG00000165629 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005174 |
|nearest_refseq=NM_005174 | |nearest_refseq=NM_005174 | ||
|nearest_unigene=Hs.271135 | |nearest_unigene=Hs.271135 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=7788101 | |start=7788101 | ||
|start_of_center_position=78037194 | |start_of_center_position=78037194 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232402.1 | |tss_id=hg_232402.1 | ||
Revision as of 12:23, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 78037194 |
|---|---|
| End of the center position in the TSS region: | 78037195 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000356708.11:21 uc001iju.4:21 NM_005174:22 NM_001001973:22 ENST00000493053.5:39 uc057rpb.1:39 BC000931:48 ENST00000462760.1:51 uc057rpc.1:51 BC020824:60 ENST00000460362.5:67 uc057rpd.1:67 ENST00000335698.4:69 uc001ijv.4:69 AK292896:69 AK296803:69 D16562:69 D16563:69 BC016812:70 AK129907:70 ENST00000465936.5:71 uc057rpe.1:71 AK294061:71 BC010380:71 ENST00000460820.6:76 uc057rpf.1:76 BC000470:81 BC013394:81 BC013865:83 CU677727:99 HQ448142:99 KJ890734:99 KJ896474:99 CR457403:100 ENST00000472202.1:102 uc057rpg.1:102 BC026049:121 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_005174 |
| Entrez ID: | 509 |
| Nearest Unigene: | Hs.271135 |
| Nearest Refseq: | NM_005174 |
| Nearest Ensembl: | ENSG00000165629 |
| Gene Name: | ATP5F1C |
| Gene Alias: | ATP5C|ATP5C1|ATP5CL1 |
| Gene Description: | ATP synthase F1 subunit gamma |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
