Difference between revisions of "TSS:Hg 232795.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Fbx44= | |Fbx44= | ||
|Fbxo6a= | |Fbxo6a= | ||
| − | |all_trans= | + | |all_trans=ENST00000642002.1:160 ENST00000641747.1:-185 ENST00000376486.3:200 ENST00000641437.1:257 ENST00000641446.1:261 ENST00000376590.9:299 NM_005957:299 AK312907:299 ENST00000418034.1:327 AY046564:327 BC053509:338 LF206719:-459 MA442296:-459 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| − | |distance= | + | |distance=160 |
| − | |distance_to_tss=- | + | |distance_to_tss=-78 |
|end=11654329 | |end=11654329 | ||
|end_of_center_position=11806267 | |end_of_center_position=11806267 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=FBG3 | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
| − | |gene_id= | + | |gene_id=4524 |
| − | |gene_name= | + | |gene_name=methylenetetrahydrofolate reductase |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:7436 |
| − | |gene_symbol= | + | |gene_symbol=MTHFR |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:7436 |
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001304791 |
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=11654328 | |start=11654328 | ||
|start_of_center_position=11806266 | |start_of_center_position=11806266 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000642002.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232795.1 | |tss_id=hg_232795.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 12:32, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11806266 |
|---|---|
| End of the center position in the TSS region: | 11806267 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000642002.1 |
|---|---|
| Distance: | 160 |
| Num_trans: | 13 |
| All_trans: | ENST00000642002.1:160 ENST00000641747.1:-185 ENST00000376486.3:200 ENST00000641437.1:257 ENST00000641446.1:261 ENST00000376590.9:299 NM_005957:299 AK312907:299 ENST00000418034.1:327 AY046564:327 BC053509:338 LF206719:-459 MA442296:-459 |
TATA-Box annotation
| Distance to TSS: | -78 |
|---|---|
| Nearest PromoterID: | NM_001304791 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | methylenetetrahydrofolate reductase |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
