Difference between revisions of "TSS:Hg 23301.1"
From referenceTSS
| Line 2: | Line 2: | ||
|ITRAF= | |ITRAF= | ||
|TRAF2= | |TRAF2= | ||
| − | |all_trans=ENST00000463502 | + | |all_trans=ENST00000463502.1:-248 NM_004180:-251 NM_133484:-259 U63830:-259 U59863:-259 ENST00000432002.5:-287 ENST00000259075.6:-306 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-248 | |distance=-248 | ||
| − | |distance_to_tss= | + | |distance_to_tss=258 |
|end=161137229 | |end=161137229 | ||
|end_of_center_position=161137222 | |end_of_center_position=161137222 | ||
|entrez_id=10010 | |entrez_id=10010 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=I-TRAF | + | |gene_alias=I-TRAF{{!}}ITRAF{{!}}TRAF2 |
|gene_description=TRAF family member associated NFKB activator | |gene_description=TRAF family member associated NFKB activator | ||
|gene_id=10010 | |gene_id=10010 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_004180 | |nearest_refseq=NM_004180 | ||
|nearest_unigene=Hs.132257 | |nearest_unigene=Hs.132257 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=161137213 | |start=161137213 | ||
|start_of_center_position=161137221 | |start_of_center_position=161137221 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=7(GGCCTTTAAAAA,-,0.00),8(GCCTTTAAAAAA,-,0.00) |
| − | |transcript_name=ENST00000463502 | + | |transcript_name=ENST00000463502.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_23301.1 | |tss_id=hg_23301.1 | ||
Revision as of 12:37, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161137221 |
|---|---|
| End of the center position in the TSS region: | 161137222 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000463502.1 |
|---|---|
| Distance: | -248 |
| Num_trans: | 7 |
| All_trans: | ENST00000463502.1:-248 NM_004180:-251 NM_133484:-259 U63830:-259 U59863:-259 ENST00000432002.5:-287 ENST00000259075.6:-306 |
TATA-Box annotation
| Distance to TSS: | 258 |
|---|---|
| Nearest PromoterID: | NM_004180 |
| Entrez ID: | 10010 |
| Nearest Unigene: | Hs.132257 |
| Nearest Refseq: | NM_004180 |
| Nearest Ensembl: | ENSG00000136560 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | I-TRAF|ITRAF|TRAF2 |
| Gene Description: | TRAF family member associated NFKB activator |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 7(GGCCTTTAAAAA,-,0.00),8(GCCTTTAAAAAA,-,0.00) |
