Difference between revisions of "TSS:Hg 234730.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|WASH5P= | |WASH5P= | ||
| − | |all_trans= | + | |all_trans=AK127806:-126 AB290159:-127 ENST00000457511.7:262 NM_001198950:262 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance=- | + | |distance=-126 |
|distance_to_tss=14 | |distance_to_tss=14 | ||
|end=29366 | |end=29366 | ||
| Line 10: | Line 10: | ||
|entrez_id=653635 | |entrez_id=653635 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=FAM39F | + | |gene_alias=FAM39F{{!}}WASH5P |
| − | |gene_description= | + | |gene_description=WASP family homolog 7, pseudogene |
| − | |gene_id= | + | |gene_id=23026 |
| − | |gene_name= | + | |gene_name=myosin XVI |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:29822 |
| − | |gene_symbol= | + | |gene_symbol=MYO16 |
| − | |gene_synonyms= | + | |gene_synonyms=KIAA0865 MYR8 Myo16b NYAP3 PPP1R107 |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:29822 |
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_024540 | |nearest_promoter_id=NR_024540 | ||
|nearest_refseq=NR_024540 | |nearest_refseq=NR_024540 | ||
|nearest_unigene=Hs.446466 | |nearest_unigene=Hs.446466 | ||
| − | |num_trans= | + | |num_trans=4 |
|peakPage= | |peakPage= | ||
|peak_id=hg_234730.1 | |peak_id=hg_234730.1 | ||
| Line 32: | Line 32: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
| − | |transcript_name= | + | |transcript_name=AK127806 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234730.1 | |tss_id=hg_234730.1 | ||
Revision as of 13:17, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 108629348 |
|---|---|
| End of the center position in the TSS region: | 108629349 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK127806 |
|---|---|
| Distance: | -126 |
| Num_trans: | 4 |
| All_trans: | AK127806:-126 AB290159:-127 ENST00000457511.7:262 NM_001198950:262 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NR_024540 |
| Entrez ID: | 653635 |
| Nearest Unigene: | Hs.446466 |
| Nearest Refseq: | NR_024540 |
| Nearest Ensembl: | |
| Gene Name: | myosin XVI |
| Gene Alias: | FAM39F|WASH5P |
| Gene Description: | WASP family homolog 7, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.135 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
