Difference between revisions of "TSS:Hg 236267.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MT1= | |MT1= | ||
|MTD= | |MTD= | ||
| + | |all_trans=CU691288:-230 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-230 |
| − | |distance_to_tss= | + | |distance_to_tss=1259 |
|end=56627044 | |end=56627044 | ||
|end_of_center_position=72060440 | |end_of_center_position=72060440 | ||
|entrez_id=4493 | |entrez_id=4493 | ||
|gc_percent=0.378109 | |gc_percent=0.378109 | ||
| − | |gene_alias=MT-1E | + | |gene_alias=MT-1E{{!}}MT-IE{{!}}MT1{{!}}MTD |
|gene_description=metallothionein 1E | |gene_description=metallothionein 1E | ||
| − | |gene_name= | + | |gene_id=3240 |
| + | |gene_name=haptoglobin | ||
| + | |gene_source=HGNC:5141 | ||
| + | |gene_symbol=HP | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5141 | ||
|nearest_ensembl=ENSG00000169715 | |nearest_ensembl=ENSG00000169715 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363555 |
|nearest_refseq=NM_175617 | |nearest_refseq=NM_175617 | ||
|nearest_unigene=Hs.744893 | |nearest_unigene=Hs.744893 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=56627035 | |start=56627035 | ||
|start_of_center_position=72060439 | |start_of_center_position=72060439 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(TAGTATAAAAAG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=CU691288 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_236267.1 | |tss_id=hg_236267.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:52, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72060439 |
|---|---|
| End of the center position in the TSS region: | 72060440 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU691288 |
|---|---|
| Distance: | -230 |
| Num_trans: | 1 |
| All_trans: | CU691288:-230 |
TATA-Box annotation
| Distance to TSS: | 1259 |
|---|---|
| Nearest PromoterID: | NM_001363555 |
| Entrez ID: | 4493 |
| Nearest Unigene: | Hs.744893 |
| Nearest Refseq: | NM_175617 |
| Nearest Ensembl: | ENSG00000169715 |
| Gene Name: | haptoglobin |
| Gene Alias: | MT-1E|MT-IE|MT1|MTD |
| Gene Description: | metallothionein 1E |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(TAGTATAAAAAG,-,0.00) |
