Difference between revisions of "TSS:Hg 236353.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000562866.1:-234 NR_036480:-234 AK096286:-234 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=-234 |
| − | |distance_to_tss= | + | |distance_to_tss=29 |
|end=6701797 | |end=6701797 | ||
|end_of_center_position=89712093 | |end_of_center_position=89712093 | ||
| Line 10: | Line 11: | ||
|gene_alias=dJ126A5.1 | |gene_alias=dJ126A5.1 | ||
|gene_description=DnaJ heat shock protein family (Hsp40) member C11 | |gene_description=DnaJ heat shock protein family (Hsp40) member C11 | ||
| − | |gene_name= | + | |gene_id=100128881 |
| + | |gene_name=VPS9D1 antisense RNA 1 | ||
| + | |gene_source=HGNC:48915 | ||
| + | |gene_symbol=VPS9D1-AS1 | ||
| + | |gene_synonyms=MYU | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:48915 | ||
|nearest_ensembl=ENSG00000007923 | |nearest_ensembl=ENSG00000007923 | ||
|nearest_promoter_id=NM_018198 | |nearest_promoter_id=NM_018198 | ||
|nearest_refseq=NM_018198 | |nearest_refseq=NM_018198 | ||
|nearest_unigene=Hs.462640 | |nearest_unigene=Hs.462640 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=6701777 | |start=6701777 | ||
|start_of_center_position=89712092 | |start_of_center_position=89712092 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000562866.1 NR_036480 AK096286 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236353.1 | |tss_id=hg_236353.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:54, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89712092 |
|---|---|
| End of the center position in the TSS region: | 89712093 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000562866.1 NR_036480 AK096286 |
|---|---|
| Distance: | -234 |
| Num_trans: | 3 |
| All_trans: | ENST00000562866.1:-234 NR_036480:-234 AK096286:-234 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_018198 |
| Entrez ID: | 55735 |
| Nearest Unigene: | Hs.462640 |
| Nearest Refseq: | NM_018198 |
| Nearest Ensembl: | ENSG00000007923 |
| Gene Name: | VPS9D1 antisense RNA 1 |
| Gene Alias: | dJ126A5.1 |
| Gene Description: | DnaJ heat shock protein family (Hsp40) member C11 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
