Difference between revisions of "TSS:Hg 236954.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|Fbx39= | |Fbx39= | ||
| − | |all_trans= | + | |all_trans=AB040880:-78 ENST00000585224.1:-437 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=-78 |
| − | |distance_to_tss= | + | |distance_to_tss=33 |
|end=6776248 | |end=6776248 | ||
|end_of_center_position=81443902 | |end_of_center_position=81443902 | ||
|entrez_id=162517 | |entrez_id=162517 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=CT144 | + | |gene_alias=CT144{{!}}Fbx39 |
|gene_description=F-box protein 39 | |gene_description=F-box protein 39 | ||
| − | |gene_id= | + | |gene_id=57597 |
| − | |gene_name= | + | |gene_name=BAH domain and coiled-coil containing 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:29279 |
| − | |gene_symbol= | + | |gene_symbol=BAHCC1 |
| − | |gene_synonyms= | + | |gene_synonyms=BAHD2 KIAA1447 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:29279 |
|nearest_ensembl=ENSG00000177294 | |nearest_ensembl=ENSG00000177294 | ||
|nearest_promoter_id=NM_153230 | |nearest_promoter_id=NM_153230 | ||
|nearest_refseq=NM_153230 | |nearest_refseq=NM_153230 | ||
|nearest_unigene=Hs.368364 | |nearest_unigene=Hs.368364 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=6776247 | |start=6776247 | ||
|start_of_center_position=81443901 | |start_of_center_position=81443901 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AB040880 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236954.1 | |tss_id=hg_236954.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 14:08, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 81443901 |
|---|---|
| End of the center position in the TSS region: | 81443902 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB040880 |
|---|---|
| Distance: | -78 |
| Num_trans: | 2 |
| All_trans: | AB040880:-78 ENST00000585224.1:-437 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_153230 |
| Entrez ID: | 162517 |
| Nearest Unigene: | Hs.368364 |
| Nearest Refseq: | NM_153230 |
| Nearest Ensembl: | ENSG00000177294 |
| Gene Name: | BAH domain and coiled-coil containing 1 |
| Gene Alias: | CT144|Fbx39 |
| Gene Description: | F-box protein 39 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
