Difference between revisions of "TSS:Hg 237195.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HRIHFB2255= | |HRIHFB2255= | ||
|NOLP= | |NOLP= | ||
| − | |all_trans= | + | |all_trans=BC009619:74 ENST00000400908.7:77 NM_001042681:77 NM_012102:77 ENST00000337907.7:252 AB036737:252 BC062342:396 ENST00000659924.1:446 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=74 |
|distance_to_tss=10 | |distance_to_tss=10 | ||
|end=34222460 | |end=34222460 | ||
| Line 11: | Line 11: | ||
|entrez_id=8715 | |entrez_id=8715 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=CT125 | + | |gene_alias=CT125{{!}}HRIHFB2255{{!}}NOLP |
|gene_description=nucleolar protein 4 | |gene_description=nucleolar protein 4 | ||
| − | |gene_id= | + | |gene_id=473 |
| − | |gene_name= | + | |gene_name=arginine-glutamic acid dipeptide repeats |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:9965 |
| − | |gene_symbol= | + | |gene_symbol=RERE |
| − | |gene_synonyms= | + | |gene_synonyms=ARG ARP ATN2 DNB1 KIAA0458 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:9965 |
|nearest_ensembl=ENSG00000101746 | |nearest_ensembl=ENSG00000101746 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282527 |
|nearest_refseq=NM_003787 | |nearest_refseq=NM_003787 | ||
|nearest_unigene=Hs.514795 | |nearest_unigene=Hs.514795 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=34222459 | |start=34222459 | ||
|start_of_center_position=8817717 | |start_of_center_position=8817717 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC009619 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_237195.1 | |tss_id=hg_237195.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 14:14, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 8817717 |
|---|---|
| End of the center position in the TSS region: | 8817718 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC009619 |
|---|---|
| Distance: | 74 |
| Num_trans: | 8 |
| All_trans: | BC009619:74 ENST00000400908.7:77 NM_001042681:77 NM_012102:77 ENST00000337907.7:252 AB036737:252 BC062342:396 ENST00000659924.1:446 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001282527 |
| Entrez ID: | 8715 |
| Nearest Unigene: | Hs.514795 |
| Nearest Refseq: | NM_003787 |
| Nearest Ensembl: | ENSG00000101746 |
| Gene Name: | arginine-glutamic acid dipeptide repeats |
| Gene Alias: | CT125|HRIHFB2255|NOLP |
| Gene Description: | nucleolar protein 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
