Difference between revisions of "TSS:Hg 237333.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC167806:-9 ENST00000595684.5:-147 ENST00000332386.9:-147 ENST00000335393.8:-147 NM_001098524:-147 NM_173544:-147 AY254197:-147 AY254198:-147 AY254199:-147 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=-9 |
| − | |distance_to_tss= | + | |distance_to_tss=-99 |
|end=905267 | |end=905267 | ||
|end_of_center_position=17523452 | |end_of_center_position=17523452 | ||
| Line 11: | Line 11: | ||
|gene_alias=PACAP | |gene_alias=PACAP | ||
|gene_description=adenylate cyclase activating polypeptide 1 | |gene_description=adenylate cyclase activating polypeptide 1 | ||
| − | |gene_id= | + | |gene_id=199786 |
| − | |gene_name= | + | |gene_name=niban apoptosis regulator 3 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:24130 |
| − | |gene_symbol= | + | |gene_symbol=NIBAN3 |
| − | |gene_synonyms= | + | |gene_synonyms=BCNP1 FLJ39802 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:24130 |
|nearest_ensembl=ENSG00000141433 | |nearest_ensembl=ENSG00000141433 | ||
|nearest_promoter_id=NM_001117 | |nearest_promoter_id=NM_001117 | ||
|nearest_refseq=NM_001117 | |nearest_refseq=NM_001117 | ||
|nearest_unigene=Hs.531719 | |nearest_unigene=Hs.531719 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=905266 | |start=905266 | ||
|start_of_center_position=17523451 | |start_of_center_position=17523451 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC167806 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_237333.1 | |tss_id=hg_237333.1 | ||
Revision as of 14:17, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17523451 |
|---|---|
| End of the center position in the TSS region: | 17523452 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC167806 |
|---|---|
| Distance: | -9 |
| Num_trans: | 9 |
| All_trans: | BC167806:-9 ENST00000595684.5:-147 ENST00000332386.9:-147 ENST00000335393.8:-147 NM_001098524:-147 NM_173544:-147 AY254197:-147 AY254198:-147 AY254199:-147 |
TATA-Box annotation
| Distance to TSS: | -99 |
|---|---|
| Nearest PromoterID: | NM_001117 |
| Entrez ID: | 116 |
| Nearest Unigene: | Hs.531719 |
| Nearest Refseq: | NM_001117 |
| Nearest Ensembl: | ENSG00000141433 |
| Gene Name: | niban apoptosis regulator 3 |
| Gene Alias: | PACAP |
| Gene Description: | adenylate cyclase activating polypeptide 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
