Difference between revisions of "TSS:Hg 240852.1"
From referenceTSS
| Line 9: | Line 9: | ||
|MNS= | |MNS= | ||
|PAS-2= | |PAS-2= | ||
| + | |all_trans=ENST00000510197.5:461 NM_001242936:461 AK124936:461 | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=461 |
| − | |distance_to_tss= | + | |distance_to_tss=25975 |
|end=144114747 | |end=144114747 | ||
|end_of_center_position=76213576 | |end_of_center_position=76213576 | ||
|entrez_id=2993 | |entrez_id=2993 | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
| − | |gene_alias=CD235a | + | |gene_alias=CD235a{{!}}GPA{{!}}GPErik{{!}}GPSAT{{!}}HGpMiV{{!}}HGpMiXI{{!}}HGpSta(C){{!}}MN{{!}}MNS{{!}}PAS-2 |
|gene_description=glycophorin A (MNS blood group) | |gene_description=glycophorin A (MNS blood group) | ||
| − | |gene_name= | + | |gene_id=100129583 |
| + | |gene_name=family with sequence similarity 47 member E | ||
| + | |gene_source=HGNC:34343 | ||
| + | |gene_symbol=FAM47E | ||
| + | |gene_synonyms=FLJ42946 LOC100129583 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:34343 | ||
|nearest_ensembl=ENSG00000170180 | |nearest_ensembl=ENSG00000170180 | ||
|nearest_promoter_id=NM_001308187 | |nearest_promoter_id=NM_001308187 | ||
|nearest_refseq=NM_002099 | |nearest_refseq=NM_002099 | ||
|nearest_unigene=Hs.434973 | |nearest_unigene=Hs.434973 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=144114739 | |start=144114739 | ||
|start_of_center_position=76213575 | |start_of_center_position=76213575 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000510197.5 NM_001242936 AK124936 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_240852.1 | |tss_id=hg_240852.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q6ZV65 | ||
}} | }} | ||
Revision as of 15:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 76213575 |
|---|---|
| End of the center position in the TSS region: | 76213576 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000510197.5 NM_001242936 AK124936 |
|---|---|
| Distance: | 461 |
| Num_trans: | 3 |
| All_trans: | ENST00000510197.5:461 NM_001242936:461 AK124936:461 |
TATA-Box annotation
| Distance to TSS: | 25975 |
|---|---|
| Nearest PromoterID: | NM_001308187 |
| Entrez ID: | 2993 |
| Nearest Unigene: | Hs.434973 |
| Nearest Refseq: | NM_002099 |
| Nearest Ensembl: | ENSG00000170180 |
| Gene Name: | family with sequence similarity 47 member E |
| Gene Alias: | CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 |
| Gene Description: | glycophorin A (MNS blood group) |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
