Difference between revisions of "TSS:Hg 242376.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC137057:-10 BC137058:-10 BC005982:27 AK290851:27 ENST00000481437.5:28 ENST00000451562.5:28 BC007104:28 BC013915:28 AK293003:28 AK130101:28 ENST00000489459.5:29 ENST00000355968.10:29 ENST00000676977.1:29 ENST00000677107.1:29 ENST00000468812.6:29 ENST00000479021.1:29 NM_001300981:29 NM_021130:29 AK316564:29 AK026569:29 BC093076:29 AK297340:29 ENST00000415933.5:30 D28351:30 BC005320:30 AK290085:30 BC106030:37 EU794650:37 BC073992:39 ENST00000620047.5:41 BC069050:43 BC003026:45 ENST00000678643.1:49 BC000689:51 Y00052:59 AB464007:70 DQ895865:71 DQ892625:71 KJ905864:72 CU674338:72 KJ891858:72 KJ897362:72 AB451438:73 AB451307:73 CR456707:73 ENST00000677521.1:239 ENST00000678789.1:300 ENST00000678165.1:327 ENST00000677022.1:484 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=-10 |
|distance_to_tss=-1 | |distance_to_tss=-1 | ||
|end=102517785 | |end=102517785 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=RAS p21 protein activator 4B | |gene_description=RAS p21 protein activator 4B | ||
| − | |gene_id= | + | |gene_id=5478 |
| − | |gene_name= | + | |gene_name=peptidylprolyl isomerase A |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:9253 |
| − | |gene_symbol= | + | |gene_symbol=PPIA |
| − | |gene_synonyms= | + | |gene_synonyms=CYPA |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:9253 |
|nearest_ensembl=ENSG00000170667 | |nearest_ensembl=ENSG00000170667 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367767 |
|nearest_refseq=NM_001277335 | |nearest_refseq=NM_001277335 | ||
|nearest_unigene=Hs.530089 | |nearest_unigene=Hs.530089 | ||
| − | |num_trans= | + | |num_trans=49 |
|species=human | |species=human | ||
|start=102517771 | |start=102517771 | ||
|start_of_center_position=44796648 | |start_of_center_position=44796648 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC137057 BC137058 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_242376.1 | |tss_id=hg_242376.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:14, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 44796648 |
|---|---|
| End of the center position in the TSS region: | 44796649 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC137057 BC137058 |
|---|---|
| Distance: | -10 |
| Num_trans: | 49 |
| All_trans: | BC137057:-10 BC137058:-10 BC005982:27 AK290851:27 ENST00000481437.5:28 ENST00000451562.5:28 BC007104:28 BC013915:28 AK293003:28 AK130101:28 ENST00000489459.5:29 ENST00000355968.10:29 ENST00000676977.1:29 ENST00000677107.1:29 ENST00000468812.6:29 ENST00000479021.1:29 NM_001300981:29 NM_021130:29 AK316564:29 AK026569:29 BC093076:29 AK297340:29 ENST00000415933.5:30 D28351:30 BC005320:30 AK290085:30 BC106030:37 EU794650:37 BC073992:39 ENST00000620047.5:41 BC069050:43 BC003026:45 ENST00000678643.1:49 BC000689:51 Y00052:59 AB464007:70 DQ895865:71 DQ892625:71 KJ905864:72 CU674338:72 KJ891858:72 KJ897362:72 AB451438:73 AB451307:73 CR456707:73 ENST00000677521.1:239 ENST00000678789.1:300 ENST00000678165.1:327 ENST00000677022.1:484 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001367767 |
| Entrez ID: | 100271927 |
| Nearest Unigene: | Hs.530089 |
| Nearest Refseq: | NM_001277335 |
| Nearest Ensembl: | ENSG00000170667 |
| Gene Name: | peptidylprolyl isomerase A |
| Gene Alias: | - |
| Gene Description: | RAS p21 protein activator 4B |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
