Difference between revisions of "TSS:Hg 242466.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000491595.1:70 BC001609:88 ENST00000475494.5:97 LF384044:-100 MA619621:-100 AK002099:110 ENST00000398475.5:124 BC006080:124 ENST00000361082.7:149 ENST00000275635.11:149 ENST00000488266.5:149 ENST00000460943.6:149 NM_014146:149 NM_032464:149 NM_032463:149 AF161531:149 AF252611:149 AF252612:149 AF252614:149 AK225150:149 AK290916:152 AK290074:152 AF252613:164 ENST00000470709.1:166 ENST00000344995.9:-461 AK092904:-461 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=70 |
| − | |distance_to_tss= | + | |distance_to_tss=14985 |
|end=128754346 | |end=128754346 | ||
|end_of_center_position=74209857 | |end_of_center_position=74209857 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=calumenin | |gene_description=calumenin | ||
| − | |gene_name= | + | |gene_id=7462 |
| + | |gene_name=linker for activation of T cells family member 2 | ||
| + | |gene_source=HGNC:12749 | ||
| + | |gene_symbol=LAT2 | ||
| + | |gene_synonyms=HSPC046 LAB NTAL WSCR5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12749 | ||
|nearest_ensembl=ENSG00000128595 | |nearest_ensembl=ENSG00000128595 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001199673 |
|nearest_refseq=NM_001219 | |nearest_refseq=NM_001219 | ||
|nearest_unigene=Hs.7753 | |nearest_unigene=Hs.7753 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=128754341 | |start=128754341 | ||
|start_of_center_position=74209856 | |start_of_center_position=74209856 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000491595.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242466.1 | |tss_id=hg_242466.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:16, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74209856 |
|---|---|
| End of the center position in the TSS region: | 74209857 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000491595.1 |
|---|---|
| Distance: | 70 |
| Num_trans: | 26 |
| All_trans: | ENST00000491595.1:70 BC001609:88 ENST00000475494.5:97 LF384044:-100 MA619621:-100 AK002099:110 ENST00000398475.5:124 BC006080:124 ENST00000361082.7:149 ENST00000275635.11:149 ENST00000488266.5:149 ENST00000460943.6:149 NM_014146:149 NM_032464:149 NM_032463:149 AF161531:149 AF252611:149 AF252612:149 AF252614:149 AK225150:149 AK290916:152 AK290074:152 AF252613:164 ENST00000470709.1:166 ENST00000344995.9:-461 AK092904:-461 |
TATA-Box annotation
| Distance to TSS: | 14985 |
|---|---|
| Nearest PromoterID: | NM_001199673 |
| Entrez ID: | 813 |
| Nearest Unigene: | Hs.7753 |
| Nearest Refseq: | NM_001219 |
| Nearest Ensembl: | ENSG00000128595 |
| Gene Name: | linker for activation of T cells family member 2 |
| Gene Alias: | - |
| Gene Description: | calumenin |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
