Difference between revisions of "TSS:Hg 242758.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RAP1= | |RAP1= | ||
| − | |all_trans= | + | |all_trans=ENST00000520970.5:10 AB209590:10 ENST00000397814.7:-18 ENST00000354870.5:-18 ENST00000518913.5:75 BC002593:75 BC009305:75 BC032105:75 BC044626:75 BC142953:99 AK291620:110 ENST00000520982.5:147 ENST00000520626.6:147 BC136679:147 BC144365:147 BC144366:147 ENST00000518656.5:158 BC101763:158 BC101765:158 BC143338:158 ENST00000306349.13:195 ENST00000306385.10:195 NM_001199:195 NR_033403:195 NM_006129:195 NR_033404:195 M22488:200 ENST00000471755.5:223 ENST00000483364.5:223 ENST00000521385.5:223 Y08723:223 Y08724:223 Y08725:223 AB527418:228 KJ896503:228 U50330:229 LF212583:-448 MA448160:-448 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=10 |
|distance_to_tss=-4 | |distance_to_tss=-4 | ||
|end=66755878 | |end=66755878 | ||
| Line 10: | Line 10: | ||
|entrez_id=27342 | |entrez_id=27342 | ||
|gc_percent=0.363184 | |gc_percent=0.363184 | ||
| − | |gene_alias=RABEX5 | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
|gene_description=RAB guanine nucleotide exchange factor 1 | |gene_description=RAB guanine nucleotide exchange factor 1 | ||
| − | |gene_id= | + | |gene_id=649 |
| − | |gene_name= | + | |gene_name=bone morphogenetic protein 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1067 |
| − | |gene_symbol= | + | |gene_symbol=BMP1 |
| − | |gene_synonyms= | + | |gene_synonyms=BMP-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1067 |
|nearest_ensembl=ENSG00000154710 | |nearest_ensembl=ENSG00000154710 | ||
|nearest_promoter_id=NM_001287061 | |nearest_promoter_id=NM_001287061 | ||
|nearest_refseq=NM_014504 | |nearest_refseq=NM_014504 | ||
|nearest_unigene=Hs.530053 | |nearest_unigene=Hs.530053 | ||
| − | |num_trans= | + | |num_trans=38 |
|rabex-5= | |rabex-5= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=22165167 | |start_of_center_position=22165167 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000520970.5 AB209590 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242758.1 | |tss_id=hg_242758.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P13497 Q59F71 |
}} | }} | ||
Revision as of 16:23, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22165167 |
|---|---|
| End of the center position in the TSS region: | 22165168 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000520970.5 AB209590 |
|---|---|
| Distance: | 10 |
| Num_trans: | 38 |
| All_trans: | ENST00000520970.5:10 AB209590:10 ENST00000397814.7:-18 ENST00000354870.5:-18 ENST00000518913.5:75 BC002593:75 BC009305:75 BC032105:75 BC044626:75 BC142953:99 AK291620:110 ENST00000520982.5:147 ENST00000520626.6:147 BC136679:147 BC144365:147 BC144366:147 ENST00000518656.5:158 BC101763:158 BC101765:158 BC143338:158 ENST00000306349.13:195 ENST00000306385.10:195 NM_001199:195 NR_033403:195 NM_006129:195 NR_033404:195 M22488:200 ENST00000471755.5:223 ENST00000483364.5:223 ENST00000521385.5:223 Y08723:223 Y08724:223 Y08725:223 AB527418:228 KJ896503:228 U50330:229 LF212583:-448 MA448160:-448 |
TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NM_001287061 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | bone morphogenetic protein 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
