Difference between revisions of "TSS:Hg 242772.1"
From referenceTSS
| Line 4: | Line 4: | ||
|GALNTL3= | |GALNTL3= | ||
|GalNAc-T5L= | |GalNAc-T5L= | ||
| + | |all_trans=ENST00000433454.3:62 AK294681:104 NM_001105541:107 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=62 |
| − | |distance_to_tss=- | + | |distance_to_tss=-282244 |
|end=70849901 | |end=70849901 | ||
|end_of_center_position=24914880 | |end_of_center_position=24914880 | ||
|entrez_id=64409 | |entrez_id=64409 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=GALNACT17 | + | |gene_alias=GALNACT17{{!}}GALNT16{{!}}GALNT20{{!}}GALNTL3{{!}}GalNAc-T17{{!}}GalNAc-T19{{!}}GalNAc-T5L{{!}}WBSCR17 |
| − | |gene_description= | + | |gene_description=polypeptide N-acetylgalactosaminyltransferase 17 |
| − | |gene_name= | + | |gene_id=4741 |
| + | |gene_name=neurofilament medium chain | ||
| + | |gene_source=HGNC:7734 | ||
| + | |gene_symbol=NEFM | ||
| + | |gene_synonyms=NF-M NFM | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7734 | ||
|nearest_ensembl=ENSG00000185274 | |nearest_ensembl=ENSG00000185274 | ||
|nearest_promoter_id=NM_022479 | |nearest_promoter_id=NM_022479 | ||
|nearest_refseq=NM_022479 | |nearest_refseq=NM_022479 | ||
|nearest_unigene=Hs.488591 | |nearest_unigene=Hs.488591 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=70849899 | |start=70849899 | ||
|start_of_center_position=24914879 | |start_of_center_position=24914879 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(CCTTATATAAGA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000433454.3 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242772.1 | |tss_id=hg_242772.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=P07197 | ||
}} | }} | ||
Revision as of 16:23, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24914879 |
|---|---|
| End of the center position in the TSS region: | 24914880 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000433454.3 |
|---|---|
| Distance: | 62 |
| Num_trans: | 3 |
| All_trans: | ENST00000433454.3:62 AK294681:104 NM_001105541:107 |
TATA-Box annotation
| Distance to TSS: | -282244 |
|---|---|
| Nearest PromoterID: | NM_022479 |
| Entrez ID: | 64409 |
| Nearest Unigene: | Hs.488591 |
| Nearest Refseq: | NM_022479 |
| Nearest Ensembl: | ENSG00000185274 |
| Gene Name: | neurofilament medium chain |
| Gene Alias: | GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 |
| Gene Description: | polypeptide N-acetylgalactosaminyltransferase 17 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CCTTATATAAGA,+,0.00) |
