Difference between revisions of "TSS:Hg 243053.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|KOX9= | |KOX9= | ||
| + | |all_trans=AK313867:149 BC033037:180 AK301872:203 ENST00000288462.4:236 BC026884:236 ENST00000374165.6:241 NM_152786:241 NM_001278630:241 NM_001278629:241 ENST00000490544.1:-452 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=149 |
| − | |distance_to_tss=- | + | |distance_to_tss=-8811 |
|end=144959691 | |end=144959691 | ||
|end_of_center_position=113410506 | |end_of_center_position=113410506 | ||
|entrez_id=7564 | |entrez_id=7564 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=HZF1 | + | |gene_alias=HZF1{{!}}KOX9 |
|gene_description=zinc finger protein 16 | |gene_description=zinc finger protein 16 | ||
| − | |gene_name= | + | |gene_id=257169 |
| + | |gene_name=chromosome 9 open reading frame 43 | ||
| + | |gene_source=HGNC:23570 | ||
| + | |gene_symbol=C9orf43 | ||
| + | |gene_synonyms=MGC17358 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23570 | ||
|nearest_ensembl=ENSG00000170631 | |nearest_ensembl=ENSG00000170631 | ||
|nearest_promoter_id=NM_001029976 | |nearest_promoter_id=NM_001029976 | ||
|nearest_refseq=NM_006958 | |nearest_refseq=NM_006958 | ||
|nearest_unigene=Hs.493225 | |nearest_unigene=Hs.493225 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=144959690 | |start=144959690 | ||
|start_of_center_position=113410505 | |start_of_center_position=113410505 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK313867 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243053.1 | |tss_id=hg_243053.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B2R9P8 | ||
}} | }} | ||
Revision as of 16:29, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 113410505 |
|---|---|
| End of the center position in the TSS region: | 113410506 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK313867 |
|---|---|
| Distance: | 149 |
| Num_trans: | 10 |
| All_trans: | AK313867:149 BC033037:180 AK301872:203 ENST00000288462.4:236 BC026884:236 ENST00000374165.6:241 NM_152786:241 NM_001278630:241 NM_001278629:241 ENST00000490544.1:-452 |
TATA-Box annotation
| Distance to TSS: | -8811 |
|---|---|
| Nearest PromoterID: | NM_001029976 |
| Entrez ID: | 7564 |
| Nearest Unigene: | Hs.493225 |
| Nearest Refseq: | NM_006958 |
| Nearest Ensembl: | ENSG00000170631 |
| Gene Name: | chromosome 9 open reading frame 43 |
| Gene Alias: | HZF1|KOX9 |
| Gene Description: | zinc finger protein 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
