Difference between revisions of "TSS:Hg 243139.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AK293743:60 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=60 |
|distance_to_tss=90207 | |distance_to_tss=90207 | ||
|end=34874130 | |end=34874130 | ||
| Line 11: | Line 11: | ||
|gene_alias=TCONS_00014671 | |gene_alias=TCONS_00014671 | ||
|gene_description=long intergenic non-protein coding RNA 1288 | |gene_description=long intergenic non-protein coding RNA 1288 | ||
| − | |gene_name= | + | |gene_id=23048 |
| + | |gene_name=formin binding protein 1 | ||
| + | |gene_source=HGNC:17069 | ||
| + | |gene_symbol=FNBP1 | ||
| + | |gene_synonyms=FBP17 KIAA0554 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:17069 | ||
|nearest_ensembl=ENSG00000254344 | |nearest_ensembl=ENSG00000254344 | ||
|nearest_promoter_id=NR_125746 | |nearest_promoter_id=NR_125746 | ||
| Line 22: | Line 27: | ||
|start_of_center_position=129919369 | |start_of_center_position=129919369 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=83(CCTTTTAGAAAA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AK293743 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243139.1 | |tss_id=hg_243139.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B4DEQ5 | ||
}} | }} | ||
Revision as of 16:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 129919369 |
|---|---|
| End of the center position in the TSS region: | 129919370 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK293743 |
|---|---|
| Distance: | 60 |
| Num_trans: | 1 |
| All_trans: | AK293743:60 |
TATA-Box annotation
| Distance to TSS: | 90207 |
|---|---|
| Nearest PromoterID: | NR_125746 |
| Entrez ID: | 103689844 |
| Nearest Unigene: | Hs.590682 |
| Nearest Refseq: | NR_125746 |
| Nearest Ensembl: | ENSG00000254344 |
| Gene Name: | formin binding protein 1 |
| Gene Alias: | TCONS_00014671 |
| Gene Description: | long intergenic non-protein coding RNA 1288 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 83(CCTTTTAGAAAA,+,0.00) |
