Difference between revisions of "TSS:Hg 243272.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AB385522:-41 KJ900500:-50 AB095935:-62 ENST00000399703.6:-350 NM_001331100:-350 NM_147195:-350 LP896544:-414 BC056266:-414 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance=- | + | |distance=-41 |
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=7815651 | |end=7815651 | ||
|end_of_center_position=38620246 | |end_of_center_position=38620246 | ||
| Line 11: | Line 11: | ||
|gene_alias=HsT21816 | |gene_alias=HsT21816 | ||
|gene_description=defensin beta 107B | |gene_description=defensin beta 107B | ||
| − | |gene_id= | + | |gene_id=253650 |
| − | |gene_name= | + | |gene_name=ankyrin repeat domain 18A |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:23643 |
| − | |gene_symbol= | + | |gene_symbol=ANKRD18A |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ35740 KIAA2015 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:23643 |
|nearest_ensembl=ENSG00000198129 | |nearest_ensembl=ENSG00000198129 | ||
|nearest_promoter_id=NM_001040705 | |nearest_promoter_id=NM_001040705 | ||
|nearest_refseq=NM_001040705 | |nearest_refseq=NM_001040705 | ||
|nearest_unigene=Hs.520874 | |nearest_unigene=Hs.520874 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=7815650 | |start=7815650 | ||
|start_of_center_position=38620245 | |start_of_center_position=38620245 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AB385522 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243272.1 | |tss_id=hg_243272.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:34, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 38620245 |
|---|---|
| End of the center position in the TSS region: | 38620246 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB385522 |
|---|---|
| Distance: | -41 |
| Num_trans: | 8 |
| All_trans: | AB385522:-41 KJ900500:-50 AB095935:-62 ENST00000399703.6:-350 NM_001331100:-350 NM_147195:-350 LP896544:-414 BC056266:-414 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001040705 |
| Entrez ID: | 503614 |
| Nearest Unigene: | Hs.520874 |
| Nearest Refseq: | NM_001040705 |
| Nearest Ensembl: | ENSG00000198129 |
| Gene Name: | ankyrin repeat domain 18A |
| Gene Alias: | HsT21816 |
| Gene Description: | defensin beta 107B |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.41791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
