Difference between revisions of "TSS:Hg 243411.1"
From referenceTSS
| Line 4: | Line 4: | ||
|USH2D= | |USH2D= | ||
|WI= | |WI= | ||
| − | |all_trans= | + | |all_trans=ENST00000466120.1:-2 AK127702:-109 KJ905038:-190 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-2 |
|distance_to_tss=-144 | |distance_to_tss=-144 | ||
|end=114503359 | |end=114503359 | ||
| Line 13: | Line 13: | ||
|entrez_id=25861 | |entrez_id=25861 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=CIP98 | + | |gene_alias=CIP98{{!}}DFNB31{{!}}PDZD7B{{!}}USH2D{{!}}WI |
|gene_description=whirlin | |gene_description=whirlin | ||
| − | |gene_id= | + | |gene_id=203286 |
| − | |gene_name= | + | |gene_name=ankyrin repeat and sterile alpha motif domain containing 6 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:26724 |
| − | |gene_symbol= | + | |gene_symbol=ANKS6 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ36928 NPHP16 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:26724 |
|nearest_ensembl=ENSG00000095397 | |nearest_ensembl=ENSG00000095397 | ||
|nearest_promoter_id=NM_001083885 | |nearest_promoter_id=NM_001083885 | ||
|nearest_refseq=NM_015404 | |nearest_refseq=NM_015404 | ||
|nearest_unigene=Hs.93836 | |nearest_unigene=Hs.93836 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=114503358 | |start=114503358 | ||
|start_of_center_position=98790493 | |start_of_center_position=98790493 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000466120.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243411.1 | |tss_id=hg_243411.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 98790493 |
|---|---|
| End of the center position in the TSS region: | 98790494 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000466120.1 |
|---|---|
| Distance: | -2 |
| Num_trans: | 3 |
| All_trans: | ENST00000466120.1:-2 AK127702:-109 KJ905038:-190 |
TATA-Box annotation
| Distance to TSS: | -144 |
|---|---|
| Nearest PromoterID: | NM_001083885 |
| Entrez ID: | 25861 |
| Nearest Unigene: | Hs.93836 |
| Nearest Refseq: | NM_015404 |
| Nearest Ensembl: | ENSG00000095397 |
| Gene Name: | ankyrin repeat and sterile alpha motif domain containing 6 |
| Gene Alias: | CIP98|DFNB31|PDZD7B|USH2D|WI |
| Gene Description: | whirlin |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
