Difference between revisions of "TSS:Hg 243493.1"
From referenceTSS
| Line 4: | Line 4: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=95 | |distance_to_tss=95 | ||
|end=131737443 | |end=131737443 | ||
| Line 10: | Line 10: | ||
|entrez_id=2889 | |entrez_id=2889 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=C3G | + | |gene_alias=C3G{{!}}GRF2 |
|gene_description=Rap guanine nucleotide exchange factor 1 | |gene_description=Rap guanine nucleotide exchange factor 1 | ||
|gene_id=2889 | |gene_id=2889 | ||
| − | |gene_name= | + | |gene_name=RAPGEF1 |
|gene_source=HGNC:4568 | |gene_source=HGNC:4568 | ||
|gene_symbol=RAPGEF1 | |gene_symbol=RAPGEF1 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_005312 | |nearest_refseq=NM_005312 | ||
|nearest_unigene=Hs.127897 | |nearest_unigene=Hs.127897 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=131737442 | |start=131737442 | ||
|start_of_center_position=2010 | |start_of_center_position=2010 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-95(CCTTTTCTGGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243493.1 | |tss_id=hg_243493.1 | ||
Revision as of 16:40, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 2010 |
|---|---|
| End of the center position in the TSS region: | 2011 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000372189.7:-95 NM_005312:-95 uc064wrk.1:-95 D21239:-95 |
TATA-Box annotation
| Distance to TSS: | 95 |
|---|---|
| Nearest PromoterID: | NM_005312 |
| Entrez ID: | 2889 |
| Nearest Unigene: | Hs.127897 |
| Nearest Refseq: | NM_005312 |
| Nearest Ensembl: | ENSG00000107263 |
| Gene Name: | RAPGEF1 |
| Gene Alias: | C3G|GRF2 |
| Gene Description: | Rap guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -95(CCTTTTCTGGGC,+,0.00) |
