Difference between revisions of "TSS:Hg 3079.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NFI-A= | |NFI-A= | ||
|NFI-L= | |NFI-L= | ||
| − | |all_trans=ENST00000403491. | + | |all_trans=AB037860:12 ENST00000664149.1:102 ENST00000670151.1:102 ENST00000662015.1:127 ENST00000403491.8:265 NM_005595:265 NM_001134673:265 AK299356:271 ENST00000371187.7:325 BC022264:327 ENST00000371189.8:-361 AK299579:-361 ENST00000485903.6:427 ENST00000371185.6:452 ENST00000479364.1:-456 ENST00000371184.6:458 NM_001145512:-484 CU692518:496 AB384210:496 DQ893250:496 DQ896579:496 KJ905238:496 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-302 |
|end=61082296 | |end=61082296 | ||
|end_of_center_position=61082260 | |end_of_center_position=61082260 | ||
|entrez_id=4774 | |entrez_id=4774 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=CTF | + | |gene_alias=BRMUTD{{!}}CTF{{!}}NF-I/A{{!}}NF1-A{{!}}NFI-A{{!}}NFI-L |
|gene_description=nuclear factor I A | |gene_description=nuclear factor I A | ||
|gene_id=4774 | |gene_id=4774 | ||
| − | |gene_name=nuclear factor I | + | |gene_name=nuclear factor I A |
|gene_source=HGNC:7784 | |gene_source=HGNC:7784 | ||
|gene_symbol=NFIA | |gene_symbol=NFIA | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_005595 | |nearest_refseq=NM_005595 | ||
|nearest_unigene=Hs.740757 | |nearest_unigene=Hs.740757 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=61082222 | |start=61082222 | ||
|start_of_center_position=61082259 | |start_of_center_position=61082259 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AB037860 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_3079.1 | |tss_id=hg_3079.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 19:28, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 61082259 |
|---|---|
| End of the center position in the TSS region: | 61082260 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB037860 |
|---|---|
| Distance: | 12 |
| Num_trans: | 22 |
| All_trans: | AB037860:12 ENST00000664149.1:102 ENST00000670151.1:102 ENST00000662015.1:127 ENST00000403491.8:265 NM_005595:265 NM_001134673:265 AK299356:271 ENST00000371187.7:325 BC022264:327 ENST00000371189.8:-361 AK299579:-361 ENST00000485903.6:427 ENST00000371185.6:452 ENST00000479364.1:-456 ENST00000371184.6:458 NM_001145512:-484 CU692518:496 AB384210:496 DQ893250:496 DQ896579:496 KJ905238:496 |
TATA-Box annotation
| Distance to TSS: | -302 |
|---|---|
| Nearest PromoterID: | NM_005595 |
| Entrez ID: | 4774 |
| Nearest Unigene: | Hs.740757 |
| Nearest Refseq: | NM_005595 |
| Nearest Ensembl: | ENSG00000162599 |
| Gene Name: | nuclear factor I A |
| Gene Alias: | BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L |
| Gene Description: | nuclear factor I A |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
