Difference between revisions of "TSS:Hg 3725.1"
From referenceTSS
| Line 4: | Line 4: | ||
|LPHH1= | |LPHH1= | ||
|LPHN2= | |LPHN2= | ||
| − | |all_trans=ENST00000370715.5:13 ENST00000370713.5:13 ENST00000319517.10:13 ENST00000627151.2:13 ENST00000370717.6:13 | + | |all_trans=ENST00000674489.1:0 ENST00000674442.1:0 ENST00000674419.1:0 ENST00000674407.1:0 ENST00000674168.1:0 ENST00000674307.1:0 ENST00000674209.1:0 NM_001366005:0 NM_001350699:0 ENST00000370715.5:13 ENST00000370713.5:13 ENST00000319517.10:13 ENST00000627151.2:13 ENST00000370717.6:13 NM_001297706:13 NM_001330645:13 NM_001297705:13 NM_012302:13 AF104266:13 AF104938:13 AF104939:13 ENST00000674367.1:46 ENST00000674410.1:46 ENST00000674373.1:46 ENST00000674492.1:46 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=81800384 | |end=81800384 | ||
|end_of_center_position=81800377 | |end_of_center_position=81800377 | ||
|entrez_id=23266 | |entrez_id=23266 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=CIRL2 | + | |gene_alias=CIRL2{{!}}CL2{{!}}LEC1{{!}}LPHH1{{!}}LPHN2 |
|gene_description=adhesion G protein-coupled receptor L2 | |gene_description=adhesion G protein-coupled receptor L2 | ||
|gene_id=23266 | |gene_id=23266 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:18582 | |hgnc_mgi_id=HGNC:18582 | ||
|nearest_ensembl=ENSG00000117114 | |nearest_ensembl=ENSG00000117114 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001350699 |
|nearest_refseq=NM_012302 | |nearest_refseq=NM_012302 | ||
|nearest_unigene=Hs.24212 | |nearest_unigene=Hs.24212 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=81800368 | |start=81800368 | ||
|start_of_center_position=81800376 | |start_of_center_position=81800376 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000674489.1 ENST00000674442.1 ENST00000674419.1 ENST00000674407.1 ENST00000674168.1 ENST00000674307.1 ENST00000674209.1 NM_001366005 NM_001350699 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_3725.1 | |tss_id=hg_3725.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A6I8PIV6 A0A6I8PRJ0 A0A6I8PRM6 A0A6I8PRQ0 A0A6I8PTT2 A0A6I8PUE4 |
}} | }} | ||
Revision as of 21:57, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 81800376 |
|---|---|
| End of the center position in the TSS region: | 81800377 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000674489.1 ENST00000674442.1 ENST00000674419.1 ENST00000674407.1 ENST00000674168.1 ENST00000674307.1 ENST00000674209.1 NM_001366005 NM_001350699 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000674489.1:0 ENST00000674442.1:0 ENST00000674419.1:0 ENST00000674407.1:0 ENST00000674168.1:0 ENST00000674307.1:0 ENST00000674209.1:0 NM_001366005:0 NM_001350699:0 ENST00000370715.5:13 ENST00000370713.5:13 ENST00000319517.10:13 ENST00000627151.2:13 ENST00000370717.6:13 NM_001297706:13 NM_001330645:13 NM_001297705:13 NM_012302:13 AF104266:13 AF104938:13 AF104939:13 ENST00000674367.1:46 ENST00000674410.1:46 ENST00000674373.1:46 ENST00000674492.1:46 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001350699 |
| Entrez ID: | 23266 |
| Nearest Unigene: | Hs.24212 |
| Nearest Refseq: | NM_012302 |
| Nearest Ensembl: | ENSG00000117114 |
| Gene Name: | adhesion G protein-coupled receptor L2 |
| Gene Alias: | CIRL2|CL2|LEC1|LPHH1|LPHN2 |
| Gene Description: | adhesion G protein-coupled receptor L2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
