Difference between revisions of "TSS:Hg 62321.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000512287.1:0 | + | |all_trans=ENST00000512287.1:0 ENST00000656836.1:0 ENST00000663467.1:0 ENST00000660242.1:4 ENST00000511495.1:13 ENST00000500148.6:-13 AK092460:-13 AK096014:13 ENST00000670957.1:-22 ENST00000501927.2:-24 ENST00000503483.6:25 ENST00000502041.2:-28 AK096680:-28 ENST00000505295.1:-29 ENST00000669977.1:-34 ENST00000663674.1:38 NR_034121:-38 NR_034122:-38 NR_034123:-38 |
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:48997 | |hgnc_mgi_id=HGNC:48997 | ||
|nearest_ensembl=ENSG00000247572 | |nearest_ensembl=ENSG00000247572 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_034121 |
|nearest_refseq=NR_034121 | |nearest_refseq=NR_034121 | ||
|nearest_unigene=Hs.655855 | |nearest_unigene=Hs.655855 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=81301509 | |start=81301509 | ||
|start_of_center_position=81301520 | |start_of_center_position=81301520 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000512287.1 | + | |transcript_name=ENST00000512287.1 ENST00000656836.1 ENST00000663467.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_62321.1 | |tss_id=hg_62321.1 | ||
Revision as of 07:39, 18 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 81301520 |
|---|---|
| End of the center position in the TSS region: | 81301521 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000512287.1 ENST00000656836.1 ENST00000663467.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000512287.1:0 ENST00000656836.1:0 ENST00000663467.1:0 ENST00000660242.1:4 ENST00000511495.1:13 ENST00000500148.6:-13 AK092460:-13 AK096014:13 ENST00000670957.1:-22 ENST00000501927.2:-24 ENST00000503483.6:25 ENST00000502041.2:-28 AK096680:-28 ENST00000505295.1:-29 ENST00000669977.1:-34 ENST00000663674.1:38 NR_034121:-38 NR_034122:-38 NR_034123:-38 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NR_034121 |
| Entrez ID: | 100131067 |
| Nearest Unigene: | Hs.655855 |
| Nearest Refseq: | NR_034121 |
| Nearest Ensembl: | ENSG00000247572 |
| Gene Name: | CKMT2 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | CKMT2 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.085 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
