Difference between revisions of "TSS:Hg 624.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Fbx44= | |Fbx44= | ||
|Fbxo6a= | |Fbxo6a= | ||
| − | |all_trans= | + | |all_trans=ENST00000251547.10:0 ENST00000376768.5:0 ENST00000376760.5:0 ENST00000376762.8:0 NM_033182:0 CR749368:0 AK296025:0 AK301418:0 AK316284:0 AK316347:0 AY040878:0 AK293721:0 BC007832:0 ENST00000425796.5:-6 ENST00000376770.5:-6 NR_130909:-6 NM_001304790:-6 NM_001330355:-6 NM_001014765:-6 NM_183413:-6 AK294053:6 NM_001304791:-456 NM_183412:-456 ENST00000251546.8:-488 AK055344:-488 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=14 |
|end=11654919 | |end=11654919 | ||
|end_of_center_position=11654891 | |end_of_center_position=11654891 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
| − | |gene_alias=FBG3 | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
|gene_id=93611 | |gene_id=93611 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:24847 | |hgnc_mgi_id=HGNC:24847 | ||
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_033182 |
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=11654862 | |start=11654862 | ||
|start_of_center_position=11654890 | |start_of_center_position=11654890 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000376768.5 | + | |transcript_name=ENST00000251547.10 ENST00000376768.5 ENST00000376760.5 ENST00000376762.8 NM_033182 CR749368 AK296025 AK301418 AK316284 AK316347 AY040878 AK293721 BC007832 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_624.1 | |tss_id=hg_624.1 | ||
Revision as of 07:41, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654890 |
|---|---|
| End of the center position in the TSS region: | 11654891 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000251547.10 ENST00000376768.5 ENST00000376760.5 ENST00000376762.8 NM_033182 CR749368 AK296025 AK301418 AK316284 AK316347 AY040878 AK293721 BC007832 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000251547.10:0 ENST00000376768.5:0 ENST00000376760.5:0 ENST00000376762.8:0 NM_033182:0 CR749368:0 AK296025:0 AK301418:0 AK316284:0 AK316347:0 AY040878:0 AK293721:0 BC007832:0 ENST00000425796.5:-6 ENST00000376770.5:-6 NR_130909:-6 NM_001304790:-6 NM_001330355:-6 NM_001014765:-6 NM_183413:-6 AK294053:6 NM_001304791:-456 NM_183412:-456 ENST00000251546.8:-488 AK055344:-488 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_033182 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 44 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
