Difference between revisions of "TSS:Hg 65587.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000655306.1:0 NR_126016:0 NR_126017:0 NR_126015:0 AK094934:0 ENST00000663198.1:-7 ENST00000671039.1:-7 ENST00000661080.2:-7 ENST00000653195.1:-11 DQ601586:-388 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:52055 | |hgnc_mgi_id=HGNC:52055 | ||
|nearest_ensembl=ENSG00000272142 | |nearest_ensembl=ENSG00000272142 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_126015 |
|nearest_refseq=NR_126015 | |nearest_refseq=NR_126015 | ||
|nearest_unigene=Hs.131700 | |nearest_unigene=Hs.131700 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=5003784 | |start=5003784 | ||
|start_of_center_position=5003806 | |start_of_center_position=5003806 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=42(GGCCCGAAAAGC,-,0.00) |
| − | |transcript_name=NR_126017 | + | |transcript_name=ENST00000655306.1 NR_126016 NR_126017 NR_126015 AK094934 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_65587.1 | |tss_id=hg_65587.1 | ||
Revision as of 08:55, 18 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5003806 |
|---|---|
| End of the center position in the TSS region: | 5003807 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000655306.1 NR_126016 NR_126017 NR_126015 AK094934 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000655306.1:0 NR_126016:0 NR_126017:0 NR_126015:0 AK094934:0 ENST00000663198.1:-7 ENST00000671039.1:-7 ENST00000661080.2:-7 ENST00000653195.1:-11 DQ601586:-388 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NR_126015 |
| Entrez ID: | 100129461 |
| Nearest Unigene: | Hs.131700 |
| Nearest Refseq: | NR_126015 |
| Nearest Ensembl: | ENSG00000272142 |
| Gene Name: | LYRM4 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | LYRM4 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 42(GGCCCGAAAAGC,-,0.00) |
