Difference between revisions of "TSS:Hg 82398.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|GCS1L= | |GCS1L= | ||
| − | |all_trans= | + | |all_trans=ENST00000649206.1:12 ENST00000265846.10:29 NM_006869:29 AB097049:78 AF082324:78 AJ006422:-203 BC033747:225 AB587419:229 KJ898337:231 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-33 |
|end=954717 | |end=954717 | ||
|end_of_center_position=954713 | |end_of_center_position=954713 | ||
|entrez_id=11033 | |entrez_id=11033 | ||
|gc_percent=0.835821 | |gc_percent=0.835821 | ||
| − | |gene_alias=CENTA1 | + | |gene_alias=CENTA1{{!}}GCS1L{{!}}p42IP4 |
|gene_description=ArfGAP with dual PH domains 1 | |gene_description=ArfGAP with dual PH domains 1 | ||
|gene_id=11033 | |gene_id=11033 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=954712 | |start_of_center_position=954712 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000649206.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_82398.1 | |tss_id=hg_82398.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A3B3ISA7 |
}} | }} | ||
Revision as of 15:27, 18 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 954712 |
|---|---|
| End of the center position in the TSS region: | 954713 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000649206.1 |
|---|---|
| Distance: | 12 |
| Num_trans: | 9 |
| All_trans: | ENST00000649206.1:12 ENST00000265846.10:29 NM_006869:29 AB097049:78 AF082324:78 AJ006422:-203 BC033747:225 AB587419:229 KJ898337:231 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NM_006869 |
| Entrez ID: | 11033 |
| Nearest Unigene: | Hs.602573 |
| Nearest Refseq: | NM_006869 |
| Nearest Ensembl: | ENSG00000105963 |
| Gene Name: | ArfGAP with dual PH domains 1 |
| Gene Alias: | CENTA1|GCS1L|p42IP4 |
| Gene Description: | ArfGAP with dual PH domains 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
