Difference between revisions of "TSS:Hg 8799.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000489556.5 | + | |all_trans=ENST00000489556.5:-40 ENST00000470788.1:-41 ENST00000481095.5:-45 ENST00000496277.5:45 ENST00000478120.5:-67 ENST00000498382.5:-72 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=-40 | |distance=-40 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-87053 |
|end=224529265 | |end=224529265 | ||
|end_of_center_position=224529264 | |end_of_center_position=224529264 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:26802 | |hgnc_mgi_id=HGNC:26802 | ||
|nearest_ensembl=ENSG00000143786 | |nearest_ensembl=ENSG00000143786 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152495 |
|nearest_refseq=NM_152495 | |nearest_refseq=NM_152495 | ||
|nearest_unigene=Hs.731723 | |nearest_unigene=Hs.731723 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=224529262 | |start=224529262 | ||
|start_of_center_position=224529263 | |start_of_center_position=224529263 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000489556.5 | + | |transcript_name=ENST00000489556.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_8799.1 | |tss_id=hg_8799.1 | ||
Revision as of 17:37, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 224529263 |
|---|---|
| End of the center position in the TSS region: | 224529264 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000489556.5 |
|---|---|
| Distance: | -40 |
| Num_trans: | 6 |
| All_trans: | ENST00000489556.5:-40 ENST00000470788.1:-41 ENST00000481095.5:-45 ENST00000496277.5:45 ENST00000478120.5:-67 ENST00000498382.5:-72 |
TATA-Box annotation
| Distance to TSS: | -87053 |
|---|---|
| Nearest PromoterID: | NM_152495 |
| Entrez ID: | 149111 |
| Nearest Unigene: | Hs.731723 |
| Nearest Refseq: | NM_152495 |
| Nearest Ensembl: | ENSG00000143786 |
| Gene Name: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Alias: | CNIH-3 |
| Gene Description: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
