Difference between revisions of "TSS:Hg 96301.1"
From referenceTSS
| Line 17: | Line 17: | ||
|P19ARF= | |P19ARF= | ||
|TP16= | |TP16= | ||
| − | |all_trans= | + | |all_trans=ENST00000651588.1:12 ENST00000652420.1:240 ENST00000584351.5:253 ENST00000583719.5:253 ENST00000580467.5:253 ENST00000585267.5:253 ENST00000580576.6:253 ENST00000428597.6:253 NR_003529:253 NR_120536:253 NR_047542:253 NR_047541:253 NR_047540:253 NR_047539:253 NR_047538:253 NR_047537:253 NR_047536:253 NR_047535:253 NR_047534:253 NR_047533:253 NR_047532:253 NR_047543:253 DQ485454:253 GQ422823:253 GQ495926:253 GQ495925:253 AB548314:253 DQ485453:253 ENST00000455933.7:284 ENST00000645313.2:285 ENST00000582301.5:364 ENST00000582072.5:364 ENST00000584816.5:364 ENST00000584020.5:364 ENST00000577551.5:364 ENST00000584637.5:364 ENST00000581051.5:364 GQ495924:364 GQ495918:364 GQ495919:364 GQ495920:364 GQ495921:364 GQ495922:364 GQ495923:364 ENST00000468603.7:-391 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=12 |
|distance_to_tss=-43 | |distance_to_tss=-43 | ||
|end=21994538 | |end=21994538 | ||
| Line 26: | Line 26: | ||
|entrez_id=1029 | |entrez_id=1029 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
| − | |gene_alias=ARF | + | |gene_alias=ARF{{!}}CDK4I{{!}}CDKN2{{!}}CMM2{{!}}INK4{{!}}INK4A{{!}}MLM{{!}}MTS-1{{!}}MTS1{{!}}P14{{!}}P14ARF{{!}}P16{{!}}P16-INK4A{{!}}P16INK4{{!}}P16INK4A{{!}}P19{{!}}P19ARF{{!}}TP16 |
|gene_description=cyclin dependent kinase inhibitor 2A | |gene_description=cyclin dependent kinase inhibitor 2A | ||
|gene_id=100048912 | |gene_id=100048912 | ||
| Line 32: | Line 32: | ||
|gene_source=HGNC:34341 | |gene_source=HGNC:34341 | ||
|gene_symbol=CDKN2B-AS1 | |gene_symbol=CDKN2B-AS1 | ||
| − | |gene_synonyms=ANRIL CDKN2B-AS | + | |gene_synonyms=ANRIL CDKN2B-AS NCRNA00089 PCAT12 RP11-145E5.4 p15AS |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:34341 | |hgnc_mgi_id=HGNC:34341 | ||
| Line 39: | Line 39: | ||
|nearest_refseq=NM_000077 | |nearest_refseq=NM_000077 | ||
|nearest_unigene=Hs.512599 | |nearest_unigene=Hs.512599 | ||
| − | |num_trans= | + | |num_trans=45 |
|species=human | |species=human | ||
|start=21994529 | |start=21994529 | ||
|start_of_center_position=21994533 | |start_of_center_position=21994533 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000651588.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_96301.1 | |tss_id=hg_96301.1 | ||
Revision as of 20:51, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21994533 |
|---|---|
| End of the center position in the TSS region: | 21994534 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000651588.1 |
|---|---|
| Distance: | 12 |
| Num_trans: | 45 |
| All_trans: | ENST00000651588.1:12 ENST00000652420.1:240 ENST00000584351.5:253 ENST00000583719.5:253 ENST00000580467.5:253 ENST00000585267.5:253 ENST00000580576.6:253 ENST00000428597.6:253 NR_003529:253 NR_120536:253 NR_047542:253 NR_047541:253 NR_047540:253 NR_047539:253 NR_047538:253 NR_047537:253 NR_047536:253 NR_047535:253 NR_047534:253 NR_047533:253 NR_047532:253 NR_047543:253 DQ485454:253 GQ422823:253 GQ495926:253 GQ495925:253 AB548314:253 DQ485453:253 ENST00000455933.7:284 ENST00000645313.2:285 ENST00000582301.5:364 ENST00000582072.5:364 ENST00000584816.5:364 ENST00000584020.5:364 ENST00000577551.5:364 ENST00000584637.5:364 ENST00000581051.5:364 GQ495924:364 GQ495918:364 GQ495919:364 GQ495920:364 GQ495921:364 GQ495922:364 GQ495923:364 ENST00000468603.7:-391 |
TATA-Box annotation
| Distance to TSS: | -43 |
|---|---|
| Nearest PromoterID: | NM_058195 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | CDKN2B antisense RNA 1 |
| Gene Alias: | ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
