Difference between revisions of "TSS:Hg 98090.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AK301872:0 BC033037:-14 ENST00000288462.4:25 BC026884:25 ENST00000374165.6:30 NM_152786:30 NM_001278630:30 NM_001278629:30 AK313867:-45 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-33 |
|end=113410717 | |end=113410717 | ||
|end_of_center_position=113410709 | |end_of_center_position=113410709 | ||
| − | |entrez_id= | + | |entrez_id=54107 |
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias= | + | |gene_alias=CHARAC17{{!}}CHRAC17{{!}}CHRAC2{{!}}YBL1{{!}}p17 |
| − | |gene_description= | + | |gene_description=DNA polymerase epsilon 3, accessory subunit |
|gene_id=257169 | |gene_id=257169 | ||
|gene_name=chromosome 9 open reading frame 43 | |gene_name=chromosome 9 open reading frame 43 | ||
| Line 18: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23570 | |hgnc_mgi_id=HGNC:23570 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000148229 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_017443 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_017443 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.108112 |
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=113410699 | |start=113410699 | ||
|start_of_center_position=113410708 | |start_of_center_position=113410708 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK301872 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_98090.1 | |tss_id=hg_98090.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DX97 | + | |uniprot_id=B4DX97 |
}} | }} | ||
Revision as of 21:32, 18 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 113410708 |
|---|---|
| End of the center position in the TSS region: | 113410709 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK301872 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | AK301872:0 BC033037:-14 ENST00000288462.4:25 BC026884:25 ENST00000374165.6:30 NM_152786:30 NM_001278630:30 NM_001278629:30 AK313867:-45 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NM_017443 |
| Entrez ID: | 54107 |
| Nearest Unigene: | Hs.108112 |
| Nearest Refseq: | NM_017443 |
| Nearest Ensembl: | ENSG00000148229 |
| Gene Name: | chromosome 9 open reading frame 43 |
| Gene Alias: | CHARAC17|CHRAC17|CHRAC2|YBL1|p17 |
| Gene Description: | DNA polymerase epsilon 3, accessory subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
