Difference between revisions of "TSS:Mm 100067.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Ict1= | |Ict1= | ||
|MRP-L58= | |MRP-L58= | ||
| − | |all_trans=ENSMUST00000153983.7:0 ENSMUST00000106539.9:0 ENSMUST00000103036.4:0 ENSMUST00000128632.7:0 ENSMUST00000122946.7:0 ENSMUST00000133192.1:0 | + | |all_trans=ENSMUST00000153983.7:0 ENSMUST00000106539.9:0 ENSMUST00000103036.4:0 ENSMUST00000128632.7:0 ENSMUST00000122946.7:0 ENSMUST00000133192.1:0 NM_001347645:0 NM_001361463:0 NM_001361462:0 NM_026729:0 NR_154991:0 BC028523:0 BC079614:0 AK003192:0 ENSMUST00000135619.7:5 DQ713646:29 ENSMUST00000021079.13:45 AK003286:105 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| Line 12: | Line 12: | ||
|entrez_id=68572 | |entrez_id=68572 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=1110001A02Rik | + | |gene_alias=1110001A02Rik{{!}}1110002E03Rik{{!}}Ict1{{!}}MRP-L58 |
|gene_description=mitochondrial ribosomal protein L58 | |gene_description=mitochondrial ribosomal protein L58 | ||
|gene_id=68572 | |gene_id=68572 | ||
| − | |gene_name= | + | |gene_name=mitochondrial ribosomal protein L58 |
|gene_source=MGI:1915822 | |gene_source=MGI:1915822 | ||
| − | |gene_symbol= | + | |gene_symbol=Mrpl58 |
| − | |gene_synonyms=1110001A02Rik 1110002E03Rik | + | |gene_synonyms=1110001A02Rik 1110002E03Rik Ict1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1915822 | |hgnc_mgi_id=MGI:1915822 | ||
|nearest_ensembl=ENSMUSG00000018858 | |nearest_ensembl=ENSMUSG00000018858 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361463 |
|nearest_refseq=NM_026729 | |nearest_refseq=NM_026729 | ||
|nearest_unigene=Mm.271062 | |nearest_unigene=Mm.271062 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=mouse | |species=mouse | ||
|start=115403734 | |start=115403734 | ||
|start_of_center_position=115403755 | |start_of_center_position=115403755 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000153983.7 ENSMUST00000106539.9 ENSMUST00000103036.4 ENSMUST00000128632.7 ENSMUST00000122946.7 ENSMUST00000133192.1 NM_026729 | + | |transcript_name=ENSMUST00000153983.7 ENSMUST00000106539.9 ENSMUST00000103036.4 ENSMUST00000128632.7 ENSMUST00000122946.7 ENSMUST00000133192.1 NM_001347645 NM_001361463 NM_001361462 NM_026729 NR_154991 BC028523 BC079614 AK003192 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100067.1 | |tss_id=mm_100067.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A2A6T4 D6RHR8 Q8R035 | + | |uniprot_id=A2A6T4 D6RHR8 Q8R035 |
}} | }} | ||
Revision as of 16:08, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115403755 |
|---|---|
| End of the center position in the TSS region: | 115403756 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000153983.7 ENSMUST00000106539.9 ENSMUST00000103036.4 ENSMUST00000128632.7 ENSMUST00000122946.7 ENSMUST00000133192.1 NM_001347645 NM_001361463 NM_001361462 NM_026729 NR_154991 BC028523 BC079614 AK003192 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENSMUST00000153983.7:0 ENSMUST00000106539.9:0 ENSMUST00000103036.4:0 ENSMUST00000128632.7:0 ENSMUST00000122946.7:0 ENSMUST00000133192.1:0 NM_001347645:0 NM_001361463:0 NM_001361462:0 NM_026729:0 NR_154991:0 BC028523:0 BC079614:0 AK003192:0 ENSMUST00000135619.7:5 DQ713646:29 ENSMUST00000021079.13:45 AK003286:105 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001361463 |
| Entrez ID: | 68572 |
| Nearest Unigene: | Mm.271062 |
| Nearest Refseq: | NM_026729 |
| Nearest Ensembl: | ENSMUSG00000018858 |
| Gene Name: | mitochondrial ribosomal protein L58 |
| Gene Alias: | 1110001A02Rik|1110002E03Rik|Ict1|MRP-L58 |
| Gene Description: | mitochondrial ribosomal protein L58 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
