Difference between revisions of "TSS:Mm 100133.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C230078O20= | |C230078O20= | ||
|CD104= | |CD104= | ||
| − | |all_trans=ENSMUST00000169928.7:-54 ENSMUST00000106461.7:-54 NM_133663:-54 NM_001005608 | + | |all_trans=ENSMUST00000169928.7:-54 ENSMUST00000106461.7:-54 NM_133663:-54 NM_001005608:-54 AK147424:-54 ENSMUST00000151691.7:62 AK048888:62 ENSMUST00000021107.13:-70 L04678:-70 ENSMUST00000106460.8:198 AK142648:255 AK144947:281 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 11: | Line 11: | ||
|entrez_id=192897 | |entrez_id=192897 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=AA407042 | + | |gene_alias=AA407042{{!}}C230078O20{{!}}CD104 |
|gene_description=integrin beta 4 | |gene_description=integrin beta 4 | ||
|gene_id=192897 | |gene_id=192897 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_133663 | |nearest_refseq=NM_133663 | ||
|nearest_unigene=Mm.213873 | |nearest_unigene=Mm.213873 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=115974778 | |start=115974778 | ||
|start_of_center_position=115974779 | |start_of_center_position=115974779 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000169928.7 ENSMUST00000106461.7 NM_133663 NM_001005608 | + | |transcript_name=ENSMUST00000169928.7 ENSMUST00000106461.7 NM_133663 NM_001005608 AK147424 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100133.1 | |tss_id=mm_100133.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A2A863 | + | |uniprot_id=A2A863 A2A864 |
}} | }} | ||
Revision as of 16:09, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 115974779 |
|---|---|
| End of the center position in the TSS region: | 115974780 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000169928.7 ENSMUST00000106461.7 NM_133663 NM_001005608 AK147424 |
|---|---|
| Distance: | -54 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000169928.7:-54 ENSMUST00000106461.7:-54 NM_133663:-54 NM_001005608:-54 AK147424:-54 ENSMUST00000151691.7:62 AK048888:62 ENSMUST00000021107.13:-70 L04678:-70 ENSMUST00000106460.8:198 AK142648:255 AK144947:281 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_133663 |
| Entrez ID: | 192897 |
| Nearest Unigene: | Mm.213873 |
| Nearest Refseq: | NM_133663 |
| Nearest Ensembl: | ENSMUSG00000020758 |
| Gene Name: | integrin beta 4 |
| Gene Alias: | AA407042|C230078O20|CD104 |
| Gene Description: | integrin beta 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
