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Difference between revisions of "TSS:Mm 122545.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=uc007tjg.1:0 AK019723:0
+
|all_trans=ENSMUST00000226197.1:0 NR_166788:0 AK019723:0 ENSMUST00000228165.1:2 ENSMUST00000228096.1:9
 
|chr=chr14
 
|chr=chr14
 
|cpg_percent=0
 
|cpg_percent=0
Line 19: Line 19:
 
|hgnc_mgi_id=MGI:1925279
 
|hgnc_mgi_id=MGI:1925279
 
|nearest_ensembl=ENSMUSG00000021843
 
|nearest_ensembl=ENSMUSG00000021843
|nearest_promoter_id=NM_001347522
+
|nearest_promoter_id=NM_008477
 
|nearest_refseq=NM_008477
 
|nearest_refseq=NM_008477
 
|nearest_unigene=Mm.3110
 
|nearest_unigene=Mm.3110
|num_trans=2
+
|num_trans=5
 
|species=mouse
 
|species=mouse
 
|start=47757494
 
|start=47757494
 
|start_of_center_position=47757497
 
|start_of_center_position=47757497
 
|strand=-
 
|strand=-
|tata_box="-13(TCCTTTAGAGAC,+,0.00)"
+
|tata_box=-13(TCCTTTAGAGAC,+,0.00)
|transcript_name=uc007tjg.1 AK019723
+
|transcript_name=ENSMUST00000226197.1 NR_166788 AK019723
 
|tss_classification=no
 
|tss_classification=no
 
|tss_id=mm_122545.1
 
|tss_id=mm_122545.1

Revision as of 00:53, 20 June 2021

Basic information about the TSS


TSS ID:mm_122545.1
Species:mouse
Chr:chr14
TSS Classification:no
Start:47757494
End:47757501
Strand:-
TSS Score:1
Start of the center position in the TSS region:47757497
End of the center position in the TSS region:47757498



Gene and protein annotation


Transcript_name:ENSMUST00000226197.1 NR_166788 AK019723
Distance:0
GeneID:78029
HGNC/MGI_ID:MGI:1925279
UniProt_ID:
Gene_name:RIKEN cDNA 4930538L07 gene
Gene_symbol:4930538L07Rik
Gene_synonyms:
Gene_source:MGI:1925279



Transcript annotation


Transcript_name:ENSMUST00000226197.1 NR_166788 AK019723
Distance:0
Num_trans:5
All_trans:ENSMUST00000226197.1:0 NR_166788:0 AK019723:0 ENSMUST00000228165.1:2 ENSMUST00000228096.1:9



TATA-Box annotation


Distance to TSS:93742
Nearest PromoterID:NM_008477
Entrez ID:16709
Nearest Unigene:Mm.3110
Nearest Refseq:NM_008477
Nearest Ensembl:ENSMUSG00000021843
Gene Name:RIKEN cDNA 4930538L07 gene
Gene Alias:-
Gene Description:kinectin 1
Gene Type:protein-coding
CpG%:0
GC%:0.482587
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-13(TCCTTTAGAGAC,+,0.00)