Difference between revisions of "TSS:Mm 122545.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENSMUST00000226197.1:0 NR_166788:0 AK019723:0 ENSMUST00000228165.1:2 ENSMUST00000228096.1:9 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1925279 | |hgnc_mgi_id=MGI:1925279 | ||
|nearest_ensembl=ENSMUSG00000021843 | |nearest_ensembl=ENSMUSG00000021843 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_008477 |
|nearest_refseq=NM_008477 | |nearest_refseq=NM_008477 | ||
|nearest_unigene=Mm.3110 | |nearest_unigene=Mm.3110 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=47757494 | |start=47757494 | ||
|start_of_center_position=47757497 | |start_of_center_position=47757497 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-13(TCCTTTAGAGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENSMUST00000226197.1 NR_166788 AK019723 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_122545.1 | |tss_id=mm_122545.1 | ||
Revision as of 00:53, 20 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 47757497 |
|---|---|
| End of the center position in the TSS region: | 47757498 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000226197.1 NR_166788 AK019723 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000226197.1:0 NR_166788:0 AK019723:0 ENSMUST00000228165.1:2 ENSMUST00000228096.1:9 |
TATA-Box annotation
| Distance to TSS: | 93742 |
|---|---|
| Nearest PromoterID: | NM_008477 |
| Entrez ID: | 16709 |
| Nearest Unigene: | Mm.3110 |
| Nearest Refseq: | NM_008477 |
| Nearest Ensembl: | ENSMUSG00000021843 |
| Gene Name: | RIKEN cDNA 4930538L07 gene |
| Gene Alias: | - |
| Gene Description: | kinectin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -13(TCCTTTAGAGAC,+,0.00) |
