Difference between revisions of "TSS:Mm 155767.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Gm14924= | |Gm14924= | ||
|OTTMUSG00000018496= | |OTTMUSG00000018496= | ||
| − | |all_trans=AK170206:0 ENSMUST00000133125.2:-10 NR_030718 | + | |all_trans=AK170206:0 ENSMUST00000133125.2:-10 NR_030718:-10 ENSMUST00000147681.1:18 AK036748:18 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 11: | Line 11: | ||
|entrez_id=100038363 | |entrez_id=100038363 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias= | + | |gene_alias=Gm14924{{!}}mir-223 |
|gene_description=RIKEN cDNA F630028O10 gene | |gene_description=RIKEN cDNA F630028O10 gene | ||
|gene_id=100038363 | |gene_id=100038363 | ||
| Line 17: | Line 17: | ||
|gene_source=MGI:3641813 | |gene_source=MGI:3641813 | ||
|gene_symbol=F630028O10Rik | |gene_symbol=F630028O10Rik | ||
| − | |gene_synonyms=ENSMUSG00000065522 Gm14924 | + | |gene_synonyms=ENSMUSG00000065522 Gm14924 lnc15847 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:3641813 | |hgnc_mgi_id=MGI:3641813 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NR_030718 | |nearest_refseq=NR_030718 | ||
|nearest_unigene=Mm.30815 | |nearest_unigene=Mm.30815 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=96239935 | |start=96239935 | ||
| Line 34: | Line 34: | ||
|tss_id=mm_155767.1 | |tss_id=mm_155767.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q3TDG6 |
}} | }} | ||
Revision as of 13:49, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 96239941 |
|---|---|
| End of the center position in the TSS region: | 96239942 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK170206 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | AK170206:0 ENSMUST00000133125.2:-10 NR_030718:-10 ENSMUST00000147681.1:18 AK036748:18 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NR_030718 |
| Entrez ID: | 100038363 |
| Nearest Unigene: | Mm.30815 |
| Nearest Refseq: | NR_030718 |
| Nearest Ensembl: | ENSMUSG00000078122 |
| Gene Name: | RIKEN cDNA F630028O10 gene |
| Gene Alias: | Gm14924|mir-223 |
| Gene Description: | RIKEN cDNA F630028O10 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
