Difference between revisions of "TSS:Mm 161010.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|D230014K01Rik= | |D230014K01Rik= | ||
| − | |all_trans= | + | |all_trans=AK171813:-37 ENSMUST00000168785.1:-132 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=-37 | |distance=-37 | ||
| − | |distance_to_tss= | + | |distance_to_tss=5689 |
|end=118482521 | |end=118482521 | ||
|end_of_center_position=118482521 | |end_of_center_position=118482521 | ||
|entrez_id=217364 | |entrez_id=217364 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=C130099A03 | + | |gene_alias=C130099A03{{!}}D230014K01Rik |
|gene_description=endo-beta-N-acetylglucosaminidase | |gene_description=endo-beta-N-acetylglucosaminidase | ||
|gene_id=217364 | |gene_id=217364 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:2443788 | |hgnc_mgi_id=MGI:2443788 | ||
|nearest_ensembl=ENSMUSG00000033857 | |nearest_ensembl=ENSMUSG00000033857 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359368 |
|nearest_refseq=NM_172573 | |nearest_refseq=NM_172573 | ||
|nearest_unigene=Mm.473963 | |nearest_unigene=Mm.473963 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=118482520 | |start=118482520 | ||
|start_of_center_position=118482520 | |start_of_center_position=118482520 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK171813 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_161010.1 | |tss_id=mm_161010.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3TAJ0 | + | |uniprot_id=Q3TAJ0 |
}} | }} | ||
Revision as of 15:50, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 118482520 |
|---|---|
| End of the center position in the TSS region: | 118482521 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK171813 |
|---|---|
| Distance: | -37 |
| Num_trans: | 2 |
| All_trans: | AK171813:-37 ENSMUST00000168785.1:-132 |
TATA-Box annotation
| Distance to TSS: | 5689 |
|---|---|
| Nearest PromoterID: | NM_001359368 |
| Entrez ID: | 217364 |
| Nearest Unigene: | Mm.473963 |
| Nearest Refseq: | NM_172573 |
| Nearest Ensembl: | ENSMUSG00000033857 |
| Gene Name: | endo-beta-N-acetylglucosaminidase |
| Gene Alias: | C130099A03|D230014K01Rik |
| Gene Description: | endo-beta-N-acetylglucosaminidase |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
