Difference between revisions of "TSS:Mm 163241.1"
From referenceTSS
| Line 3: | Line 3: | ||
|OTTMUSG00000002847= | |OTTMUSG00000002847= | ||
|Rnf190= | |Rnf190= | ||
| − | |all_trans=ENSMUST00000049995.9:25 ENSMUST00000100332.3:25 NM_172568:25 NM_001039242 | + | |all_trans=ENSMUST00000049995.9:25 ENSMUST00000100332.3:25 NM_172568:25 NM_001039242:25 BC100474:32 AK132734:36 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| Line 12: | Line 12: | ||
|entrez_id=632687 | |entrez_id=632687 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=4933417C16Rik | + | |gene_alias=4933417C16Rik{{!}}AV039223{{!}}Rnf190 |
|gene_description=membrane-associated ring finger (C3HC4) 10 | |gene_description=membrane-associated ring finger (C3HC4) 10 | ||
|gene_id=632687 | |gene_id=632687 | ||
| − | |gene_name=membrane | + | |gene_name=membrane associated ring-CH-type finger 10 |
|gene_source=MGI:2443469 | |gene_source=MGI:2443469 | ||
| − | |gene_symbol= | + | |gene_symbol=Marchf10 |
| − | |gene_synonyms=4933417C16Rik OTTMUSG00000002847 Rnf190 | + | |gene_synonyms=4933417C16Rik March10 OTTMUSG00000002847 Rnf190 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2443469 | |hgnc_mgi_id=MGI:2443469 | ||
|nearest_ensembl=ENSMUSG00000078627 | |nearest_ensembl=ENSMUSG00000078627 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_172568 |
|nearest_refseq=NM_172568 | |nearest_refseq=NM_172568 | ||
|nearest_unigene=Mm.121570 | |nearest_unigene=Mm.121570 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=105456759 | |start=105456759 | ||
|start_of_center_position=105456761 | |start_of_center_position=105456761 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000049995.9 ENSMUST00000100332.3 NM_172568 NM_001039242 | + | |transcript_name=ENSMUST00000049995.9 ENSMUST00000100332.3 NM_172568 NM_001039242 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_163241.1 | |tss_id=mm_163241.1 | ||
Revision as of 16:40, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105456761 |
|---|---|
| End of the center position in the TSS region: | 105456762 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000049995.9 ENSMUST00000100332.3 NM_172568 NM_001039242 |
|---|---|
| Distance: | 25 |
| Num_trans: | 6 |
| All_trans: | ENSMUST00000049995.9:25 ENSMUST00000100332.3:25 NM_172568:25 NM_001039242:25 BC100474:32 AK132734:36 |
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | NM_172568 |
| Entrez ID: | 632687 |
| Nearest Unigene: | Mm.121570 |
| Nearest Refseq: | NM_172568 |
| Nearest Ensembl: | ENSMUSG00000078627 |
| Gene Name: | membrane associated ring-CH-type finger 10 |
| Gene Alias: | 4933417C16Rik|AV039223|Rnf190 |
| Gene Description: | membrane-associated ring finger (C3HC4) 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
